PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.52
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 840aa    MW: 91953.2 Da    PI: 5.8162
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.52genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.11.1e-162784457
                                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                     Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                                   ++t+eq+e+Le++++ +++ps  +r++L ++     +++ +q+kvWFqNrR +ek+
  evm.model.AsparagusV1_04.52 27 YVRYTAEQVEALEKVYAVCPKPSSMRRQQLIRENpilsNIEPKQIKVWFQNRRCREKQ 84
                                 5789*****************************9999*******************97 PP

2START154.68.3e-491643712204
                                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEE CS
                        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetle 83 
                                  +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W +++++ e+  
  evm.model.AsparagusV1_04.52 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISQTCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRSLEVFT 244
                                  789*******************************************************.8888888888***********99 PP

                                  EECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECT CS
                        START  84 vissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksn 159
                                      g  g+++l +++++a+++l+p Rd +++Ry+  l++g++v++++S+      p+    ++++Rae++pSg+li+p+++
  evm.model.AsparagusV1_04.52 245 MFPAGngGTIELVYMQMYAPTTLAPaRDLWTLRYTTNLEDGSLVVCERSLRGSGGGPSaasAHQFARAEMFPSGLLIRPCDG 326
                                  9999999********************************************999999989899******************* PP

                                  CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                        START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204
                                  g+s v++v+h +l+ ++++++lr+l++s+ + ++k++ a+l++ +
  evm.model.AsparagusV1_04.52 327 GGSIVHIVDHLNLEPWSVPEVLRPLYESSKVLAQKMTAAALRHIR 371
                                  ****************************************99765 PP

Sequence ? help Back to Top
Protein Sequence    Length: 840 aa     Download sequence    
MAAAVAIRTS SGSSGGLEKH MDSTGKYVRY TAEQVEALEK VYAVCPKPSS MRRQQLIREN  60
PILSNIEPKQ IKVWFQNRRC REKQRKESSR LQAVNRKLTA LNKLLMEENE RLQKQVAQLV  120
HENTYMKQQL QNVSLANDTS CESVVTTPQN PLRDASNPAG LLSIAEETLT EFLSKATGTA  180
VDWVQMPGMK PGPDSIGIVA ISQTCSGVAA RACGLVSLEP TKVAEILKDR PSWFRDCRSL  240
EVFTMFPAGN GGTIELVYMQ MYAPTTLAPA RDLWTLRYTT NLEDGSLVVC ERSLRGSGGG  300
PSAASAHQFA RAEMFPSGLL IRPCDGGGSI VHIVDHLNLE PWSVPEVLRP LYESSKVLAQ  360
KMTAAALRHI RQIAQEMSGE MVYPLGRQPA VLRTFSQKLS RGFNDAINSF VDDGWSVMGC  420
DGVEDVVVTT NPMKKTNSNA NPANAVTMPD GVVCAKASML LQNVPPALLV RFLREHRSEW  480
ADYNIDAYSA SSLKAGSAFF PGLRSTRFSG SQTIMHLAHT VENEELLEVV RLEGQALTQD  540
EAILSRDIHL LQLCSGIDEN AAGSCVQLVF APIDELFPDD APLLPSGFRV IPLDCRPDGL  600
NSNRTLDLAS SLEVGSAVNR TGGEASPSDY SLRSVLTIAF QFPYEFHLQE SVAGMARQYV  660
RNIVSAVQRV SMALAPSQLG LSSSNKLLAG SPEAVTLARW ICQSYNCHLG LDLLRSTEES  720
GESLLKMLWD HPDAILCCSL KMQPVFTFAN QAGLDMLETT LVALQDITLE KIFDEPGRAA  780
LCSDFSKLME QGYSYLPGGV CLSGMGRSVS YEQAVAWKVM DLENNLHCLA ICFMNWSFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein