PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_04.52 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 840aa MW: 91953.2 Da PI: 5.8162 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 52.1 | 1.1e-16 | 27 | 84 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le++++ +++ps +r++L ++ +++ +q+kvWFqNrR +ek+ evm.model.AsparagusV1_04.52 27 YVRYTAEQVEALEKVYAVCPKPSSMRRQQLIRENpilsNIEPKQIKVWFQNRRCREKQ 84 5789*****************************9999*******************97 PP | |||||||
2 | START | 154.6 | 8.3e-49 | 164 | 371 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetle 83 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W +++++ e+ evm.model.AsparagusV1_04.52 164 IAEETLTEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISQTCSGVAARACGLVSLEPT-KVAEILKDRPSWFRDCRSLEVFT 244 789*******************************************************.8888888888***********99 PP EECTT..EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECT CS START 84 vissg..galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksn 159 g g+++l +++++a+++l+p Rd +++Ry+ l++g++v++++S+ p+ ++++Rae++pSg+li+p+++ evm.model.AsparagusV1_04.52 245 MFPAGngGTIELVYMQMYAPTTLAPaRDLWTLRYTTNLEDGSLVVCERSLRGSGGGPSaasAHQFARAEMFPSGLLIRPCDG 326 9999999********************************************999999989899******************* PP CEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 160 ghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqc 204 g+s v++v+h +l+ ++++++lr+l++s+ + ++k++ a+l++ + evm.model.AsparagusV1_04.52 327 GGSIVHIVDHLNLEPWSVPEVLRPLYESSKVLAQKMTAAALRHIR 371 ****************************************99765 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 840 aa Download sequence |
MAAAVAIRTS SGSSGGLEKH MDSTGKYVRY TAEQVEALEK VYAVCPKPSS MRRQQLIREN 60 PILSNIEPKQ IKVWFQNRRC REKQRKESSR LQAVNRKLTA LNKLLMEENE RLQKQVAQLV 120 HENTYMKQQL QNVSLANDTS CESVVTTPQN PLRDASNPAG LLSIAEETLT EFLSKATGTA 180 VDWVQMPGMK PGPDSIGIVA ISQTCSGVAA RACGLVSLEP TKVAEILKDR PSWFRDCRSL 240 EVFTMFPAGN GGTIELVYMQ MYAPTTLAPA RDLWTLRYTT NLEDGSLVVC ERSLRGSGGG 300 PSAASAHQFA RAEMFPSGLL IRPCDGGGSI VHIVDHLNLE PWSVPEVLRP LYESSKVLAQ 360 KMTAAALRHI RQIAQEMSGE MVYPLGRQPA VLRTFSQKLS RGFNDAINSF VDDGWSVMGC 420 DGVEDVVVTT NPMKKTNSNA NPANAVTMPD GVVCAKASML LQNVPPALLV RFLREHRSEW 480 ADYNIDAYSA SSLKAGSAFF PGLRSTRFSG SQTIMHLAHT VENEELLEVV RLEGQALTQD 540 EAILSRDIHL LQLCSGIDEN AAGSCVQLVF APIDELFPDD APLLPSGFRV IPLDCRPDGL 600 NSNRTLDLAS SLEVGSAVNR TGGEASPSDY SLRSVLTIAF QFPYEFHLQE SVAGMARQYV 660 RNIVSAVQRV SMALAPSQLG LSSSNKLLAG SPEAVTLARW ICQSYNCHLG LDLLRSTEES 720 GESLLKMLWD HPDAILCCSL KMQPVFTFAN QAGLDMLETT LVALQDITLE KIFDEPGRAA 780 LCSDFSKLME QGYSYLPGGV CLSGMGRSVS YEQAVAWKVM DLENNLHCLA ICFMNWSFV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |