PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.456

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C3H

Protein Properties

Length: 665aa MW: 75222.1 Da PI: 6.0462

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.456	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.9	6.2e-07	119	141	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ff+r G+C Gd C+F+Hgp evm.model.AsparagusV1_04.456 119 VPCIFFQR-GQCLKGDMCSFMHGP 141 79****.***********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 665 aa Download sequence
MKREAKDSVS RASMMEANRP STAEEEALKK NTDCIYFLAS PFTCKKGNEC EFRHSEGARV 60 NPRDCWYWLN GNCLNPKCAF RHPPLDGLYG IPAPPGSLPS SLQAVVNVPG AYNTNKQSVP 120 CIFFQRGQCL KGDMCSFMHG PHPASNRVTD QSTNGPHQAA NSDPHQLTNG SHLVGNNVVQ 180 QAAKVSPSLT GTSQMISWGL KECNASKKAE GPVKGQLRNR SLSPYPVDYE RPRFQPTIAP 240 VSSENSPTMS SHHPLQPAEG HYSNGREADD LLGESSPGFD VLVDDEEDYL RDSEYYHNEQ 300 SINDFDYQQP DYEHVPSFQR DQYNGKGEHD RDYHRVSSEW AMERISNRRP MHRESSPDEI 360 EGLDLRHRLL KKRRVSGLRS TIGTVHHSET RNRDDHLVDD RYRGRSSGRG RDQLSSFSSR 420 FQGRITLPPR SPPIQSFDSH SDRDRRRMHG RSSPSRKINY KGRPHDRIKR TPNEESSGNG 480 RRFRYRPERR DDGNPLSFAG PKSLAELKGA MVSGTSREQA AKSMNAPLSA GYQASEDSLS 540 FEGPKPLSDI LKRKRQNTPE NEINGRIAEE RDYNGDRNEL NGRKAEESDY NDNSAENPET 600 QIIEEEKEDR ESQYKEIGGE DLNMEDEDNA YPEDEDKYHG DETAYQEDED DEDEFAKKVG 660 AFFS*

Sequence ? help Back to Top

Protein Sequence Length: 665 aa Download sequence

MKREAKDSVS RASMMEANRP STAEEEALKK NTDCIYFLAS PFTCKKGNEC EFRHSEGARV  60
NPRDCWYWLN GNCLNPKCAF RHPPLDGLYG IPAPPGSLPS SLQAVVNVPG AYNTNKQSVP  120
CIFFQRGQCL KGDMCSFMHG PHPASNRVTD QSTNGPHQAA NSDPHQLTNG SHLVGNNVVQ  180
QAAKVSPSLT GTSQMISWGL KECNASKKAE GPVKGQLRNR SLSPYPVDYE RPRFQPTIAP  240
VSSENSPTMS SHHPLQPAEG HYSNGREADD LLGESSPGFD VLVDDEEDYL RDSEYYHNEQ  300
SINDFDYQQP DYEHVPSFQR DQYNGKGEHD RDYHRVSSEW AMERISNRRP MHRESSPDEI  360
EGLDLRHRLL KKRRVSGLRS TIGTVHHSET RNRDDHLVDD RYRGRSSGRG RDQLSSFSSR  420
FQGRITLPPR SPPIQSFDSH SDRDRRRMHG RSSPSRKINY KGRPHDRIKR TPNEESSGNG  480
RRFRYRPERR DDGNPLSFAG PKSLAELKGA MVSGTSREQA AKSMNAPLSA GYQASEDSLS  540
FEGPKPLSDI LKRKRQNTPE NEINGRIAEE RDYNGDRNEL NGRKAEESDY NDNSAENPET  600
QIIEEEKEDR ESQYKEIGGE DLNMEDEDNA YPEDEDKYHG DETAYQEDED DEDEFAKKVG  660
AFFS*