PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.364
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARF
Protein Properties Length: 577aa    MW: 63786.1 Da    PI: 8.279
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.364genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B381.11.1e-25121222199
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f kvltpsd+++ g +++p+ +a+++         ++ +   +t+ d +g+sW++++iyr++++r++lt+GW++Fv++++L
  evm.model.AsparagusV1_04.364 121 FAKVLTPSDANNGGGFSVPRFCADSIfpvldfnADPPVQ--NITVIDVHGKSWDFRHIYRGTPRRHLLTTGWSRFVNSKKL 199
                                   89*********************999*****97556666..69999*********************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE-S CS
                            B3  75 kegDfvvFkldgrsefelvvkvfrk 99 
                                    +gD+vvF   ++ +++l+v+++r+
  evm.model.AsparagusV1_04.364 200 VAGDSVVFI--KNGDGKLFVGIRRT 222
                                   *********..6789999****996 PP
2Auxin_resp738.7e-25267346583
                    Auxin_resp   5 astksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                                   ++ +  Fev+Y+Pra+++eFvv+ e v ++l   +  GmR+km++etedss+ ++  Gtv+     +++ W+ S+Wr+L+
  evm.model.AsparagusV1_04.364 267 MKVGREFEVLYYPRAGSPEFVVEKEVVDRSLVFDWREGMRVKMSVETEDSSRMTWfHGTVSRKGIKNSCPWSYSPWRMLQ 346
                                   566789*************************************************9*****999999999********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 577 aa     Download sequence    
MKPIEGNPIK LIEGDPRGEH NATKRMRLSP ELAPERSPPS DPSSTTSPRA TPSNPLLRGT  60
YLRSPTPNPT PYAASPPSAT LPTPTPTRSS PRSSSILQPS SPAPPEGGLS PLPLDAEVVS  120
FAKVLTPSDA NNGGGFSVPR FCADSIFPVL DFNADPPVQN ITVIDVHGKS WDFRHIYRGT  180
PRRHLLTTGW SRFVNSKKLV AGDSVVFIKN GDGKLFVGIR RTGRSCGNPE YLRLDENFSN  240
VGSKNGFSRN LKGRVPVESI VEGIRLMKVG REFEVLYYPR AGSPEFVVEK EVVDRSLVFD  300
WREGMRVKMS VETEDSSRMT WFHGTVSRKG IKNSCPWSYS PWRMLQVTWD EPEVLPNVRA  360
VSPWQVELGP ISTHVQAQFP VFKKLKVPQT PELCSEGNGN IHFTQSLTNS VKMEKTPLFN  420
DPTFPAGMQG ARHGFGVPSL YDFVHRNTNY MFFNNLYGIN MPEELSTSQS EAASPPSQES  480
IHNHGLELLG LAACKQTRKL TKGSFQLFGQ IIHINQPNDD NGDGDCTKNE GYNEMQVGTS  540
LFHASTLSEV RYWVAVLDEE DMELSLKLCK KALTSS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-113ARF family protein