PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.3421 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB_related | ||||||||
Protein Properties | Length: 155aa MW: 17833 Da PI: 9.9246 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 4.9e-17 | 10 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +eE++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++l evm.model.AsparagusV1_04.3421 10 RGNIEPEEEDLIVRLHSLLGNR-WSLIAGRLP-GRTDNEIKNHWNSHL 55 677889****************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence |
MNYLRPDIKR GNIEPEEEDL IVRLHSLLGN RWSLIAGRLP GRTDNEIKNH WNSHLSKKQG 60 IKVRQGSTKP LSRRTKKKKE SMKTDIFVPK PVRVTSATRN NSSVFEGGDT SQLGNDIHQN 120 YDMSRDLQNE LLDRVYQEYS QLLNSHEDFN ESLS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 73 | 79 | RRTKKKK |
2 | 73 | 80 | RRTKKKKE |
3 | 74 | 80 | RTKKKKE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52600.1 | 2e-33 | MYB family protein |