PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.32
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARF
Protein Properties Length: 679aa    MW: 74708.5 Da    PI: 7.404
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.32genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.4e-23160261199
                                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT-- CS
                           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk 75 
                                  f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv++++L 
  evm.model.AsparagusV1_04.32 160 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLV 239
                                  89****************************996555555..8999************************************* PP

                                  TT-EEEEEE-SSSEE..EEEEE-S CS
                           B3  76 egDfvvFkldgrsefelvvkvfrk 99 
                                  +gD++vF   +++++ l+v+++r+
  evm.model.AsparagusV1_04.32 240 AGDSIVFL--RTESGDLCVGIRRA 261
                                  ********..5589999****997 PP
2Auxin_resp119.62.5e-39321404183
                   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrs 81 
                                  a++ as++++FevvY+Prast+eF+vk++ v++a++v++++GmRfkmafetedss++++ +Gt+++v+++dp+rWpnS+Wr+
  evm.model.AsparagusV1_04.32 321 AVRLASSGQPFEVVYYPRASTPEFCVKAAAVRAAMRVQWCPGMRFKMAFETEDSSRISWfMGTISAVQAADPIRWPNSPWRL 402
                                  67889***************************************************************************** PP

                   Auxin_resp  82 Lk 83 
                                  L+
  evm.model.AsparagusV1_04.32 403 LQ 404
                                  97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    
MNLLAERISL QTQHSLKPTT QLPQSVLLFG KSTKESSSST TPPPTAMKDT EKCLDSQLWH  60
ACAGGMVQMP SVNSKVYYFP QGHAEHAQSP VDFGNSIRVP AFVPSRVTSV KFMADPETDE  120
VFAKIRLVPV PQNEMDFGED EGLGIGCNGS AELQEKPASF AKTLTQSDAN NGGGFSVPRY  180
CAETIFPRLD YSADPPVQTV LAKDVHGEVW KFRHIYRGTP RRHLLTTGWS TFVNQKKLVA  240
GDSIVFLRTE SGDLCVGIRR AKRGIGTGHE QPSGWNPPMS AAYGGFSVFL REEENKLMRG  300
NGNGGNVRGK GRVRAESVIE AVRLASSGQP FEVVYYPRAS TPEFCVKAAA VRAAMRVQWC  360
PGMRFKMAFE TEDSSRISWF MGTISAVQAA DPIRWPNSPW RLLQVSWDEP DLLQNVKRVS  420
PWLVELVSNM PAIHLAPFSP PRKKLRIPDF PLDTHQIPTP PFSNNPHGPV GIQGARHAQY  480
GISLSDLHLN HLHSGFFHRG IHHHHPPTKF TTSLFVTNPS VDEDISCLLT IGTPSTKKTS  540
QLVLFGKPIL TEEQISLSGS GNSSSEGNNE NVGDNSPWLR DHQAVELGLE SGHVKVFMES  600
DDVGRNLDLS VFGSYEELYG KLADMFGIEK SEMMSHVLYR DATGAVKHTG DAPFSEFMKT  660
ARRLTILMDS GSNNIGNQ*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0ARF family protein