PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.2874 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | LBD | ||||||||
Protein Properties | Length: 233aa MW: 25398.5 Da PI: 6.4987 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 140.8 | 4.5e-44 | 28 | 127 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 +CaaCk+lrrkC++dCv+apyfp ++p+kf nvhk+FGasnv+k+l++l++++reda++sl+yeA++r++dPvyG+vg+i evm.model.AsparagusV1_04.2874 28 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVNVHKVFGASNVTKILNDLDRDQREDAVNSLAYEADMRLKDPVYGCVGII 107 7******************************************************************************* PP DUF260 81 lklqqqleqlkaelallkee 100 + lq+ql+ql+ +l l+k+e evm.model.AsparagusV1_04.2874 108 SILQHQLRQLQLDLTLAKAE 127 **************999886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence |
MMMPSSSAFP HSTALSSLGS SSTMTSSPCA ACKFLRRKCQ PDCVFAPYFP PDNPQKFVNV 60 HKVFGASNVT KILNDLDRDQ REDAVNSLAY EADMRLKDPV YGCVGIISIL QHQLRQLQLD 120 LTLAKAELSK YQNQNITSPS NYPHFLMSRE SSGSAGYYQQ PQQHMIMLRS YEVELATTAT 180 RMGVNGEYDA PAMAGNGTSA GSVGACGGQF FKTTANGDAR EERHSSEVCE DQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65620.3 | 1e-54 | LBD family protein |