PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_04.2573 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 240aa MW: 26351.5 Da PI: 7.4773 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.4 | 7.9e-09 | 59 | 100 | 16 | 47 |
HHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 16 vkqlGgg...........tWktIartmgkgRtlkqcksrwqky 47 ++q + + W++Ia +++ gRt++++k++w+++ evm.model.AsparagusV1_04.2573 59 HHQTPQPprqqvscsskfLWSLIAGRLP-GRTDNEIKNYWNTH 100 5555555777777777777*********.************97 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence |
MGRSPCCEKA HTNKGAWTKE EDERLISYIX XXXLPPPLDQ LPPSRPQAWQ LHRGGGRAHH 60 QTPQPPRQQV SCSSKFLWSL IAGRLPGRTD NEIKNYWNTH IKRKLLSRGV DPQTHRPVVA 120 NGVASPVTLE ANQSKKIEEE DGHSGASVTS TGTEEERCPD LNLDLSISLP WSADHVKLEE 180 TVAVAEGSSG VVCLCCNLGF GSGDGCSSCK AGSNPPHVIR YYRPLEERGE RIDYSSNFK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G34990.1 | 7e-45 | MYB family protein |