PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.239 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 243aa MW: 27986.1 Da PI: 8.2778 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7.1e-19 | 19 | 66 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+llv+ v+++G g+W++++r g++R++k+c++rw +yl evm.model.AsparagusV1_04.239 19 KGPWTPQEDKLLVEHVNLHGEGRWNSVSRLTGLKRSGKSCRLRWVNYL 66 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53 | 7.9e-17 | 72 | 116 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++ evm.model.AsparagusV1_04.239 72 RGKITPHEETIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 116 8999******************.*********.************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence |
MESAVQFGWS SRFDDGWRKG PWTPQEDKLL VEHVNLHGEG RWNSVSRLTG LKRSGKSCRL 60 RWVNYLRPDL KRGKITPHEE TIILELHARW GNRWSTIARS LPGRTDNEIK NYWRTHFKKG 120 KPTCRNSDKT RARSRFIRHQ QEQQNQHLQH QDLQPQQPQQ QLQLQHTAAM AQEIQEMAAY 180 MFPAPYNMFQ NIGEHLNVGS TSEEGSPEDG PEMAWGNLWN LDDVNDARDA AGEDIGGFSF 240 GG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 3e-68 | MYB family protein |