PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.1945 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | Trihelix | ||||||||
Protein Properties | Length: 878aa MW: 96462.8 Da PI: 9.3995 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 63.7 | 4.2e-20 | 788 | 868 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +W+ +e++ Li+ r e+++r+++ k ++ lWeevs+ + ++g++rsp qCk+ w +l ++y++ +++ek++ +++p evm.model.AsparagusV1_04.1945 788 KWKPEEIKRLITKRAELDDRFQAVKGRMILWEEVSSSLLDHGITRSPAQCKSLWASLVQKYEESRTNEKSK-----RNWP 862 7********************************************************************95.....79** PP trihelix 81 yfdqle 86 yf+ ++ evm.model.AsparagusV1_04.1945 863 YFTAVD 868 **9876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 878 aa Download sequence |
MASLAAFPSL CPCRLSRRPS SLFRPAVSCS VAPPSTVSGG KETKLPRRRS RRRDGAGKSM 60 EDSVQRKLEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDYDELG 120 IQKIVPDTTF IKRWSHKIEA VVITHGHEDH IGALPWVIPA LDSRTPIFAS SFTMELIKKR 180 LKEFGIFATS RFKVFTCKRK FLAGPFEVEP IRVTHSIPDC CGLVLRCNDG TIFHTGDWKI 240 DESPLDGKVF DRETLEALSK EGVTLMMSDS TNVLSPGRSI SEAVVRDSLI RRISEAKGRV 300 ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA FKDGKAPIDP STLVKVEDID 360 AYAPKDLLIV TTGSQAEPRA ALNLASFGSS HSLKLNKEDL ILYSAKVIPG NETRVMKMLN 420 RISDIGSTIV MGKNEGLHTS GHAYHGELEE VLRLVKPQHF LPIHGELLFL KEHELLGKST 480 GIRHTTVIKN GEMLGVSHLR NRRVLSNGFA SLGKEELQLM YNDGDKAFGT SAELCVDERL 540 RIANDGIIVV CMEILRPQNI NGSSQVSLKG KIRITTRCLW LDKGKLLDAL YKAAHAALSS 600 CPVNCPLTHM ERIVSEVLRK MVRKYSSKRP EVIAVAVENT VGVLTEDFKT KLSGTSLSGF 660 GLSSKNKSSG AHLGKILSWK SASADDEATN ATNTLGNQTE NVAEGENSED EQSVPMADAI 720 PGPEKLSPSL GSPTSKSTLE SLKGSSTVQP PEVIITSENS SKNAKVSVEE NKASETKVVA 780 RTPSKRNKWK PEEIKRLITK RAELDDRFQA VKGRMILWEE VSSSLLDHGI TRSPAQCKSL 840 WASLVQKYEE SRTNEKSKRN WPYFTAVDKI LSIREAA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63420.1 | 0.0 | Trihelix family protein |