PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1945
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family Trihelix
Protein Properties Length: 878aa    MW: 96462.8 Da    PI: 9.3995
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1945genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.74.2e-20788868186
                       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                                    +W+ +e++ Li+ r e+++r+++ k ++ lWeevs+ + ++g++rsp qCk+ w +l ++y++ +++ek++     +++p
  evm.model.AsparagusV1_04.1945 788 KWKPEEIKRLITKRAELDDRFQAVKGRMILWEEVSSSLLDHGITRSPAQCKSLWASLVQKYEESRTNEKSK-----RNWP 862
                                    7********************************************************************95.....79** PP

                       trihelix  81 yfdqle 86 
                                    yf+ ++
  evm.model.AsparagusV1_04.1945 863 YFTAVD 868
                                    **9876 PP

Sequence ? help Back to Top
Protein Sequence    Length: 878 aa     Download sequence    
MASLAAFPSL CPCRLSRRPS SLFRPAVSCS VAPPSTVSGG KETKLPRRRS RRRDGAGKSM  60
EDSVQRKLEQ FYEGSDGPPL RVLPIGGLGE IGMNCMLVGN YDRYILIDAG IMFPDYDELG  120
IQKIVPDTTF IKRWSHKIEA VVITHGHEDH IGALPWVIPA LDSRTPIFAS SFTMELIKKR  180
LKEFGIFATS RFKVFTCKRK FLAGPFEVEP IRVTHSIPDC CGLVLRCNDG TIFHTGDWKI  240
DESPLDGKVF DRETLEALSK EGVTLMMSDS TNVLSPGRSI SEAVVRDSLI RRISEAKGRV  300
ITTQFASNIH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA FKDGKAPIDP STLVKVEDID  360
AYAPKDLLIV TTGSQAEPRA ALNLASFGSS HSLKLNKEDL ILYSAKVIPG NETRVMKMLN  420
RISDIGSTIV MGKNEGLHTS GHAYHGELEE VLRLVKPQHF LPIHGELLFL KEHELLGKST  480
GIRHTTVIKN GEMLGVSHLR NRRVLSNGFA SLGKEELQLM YNDGDKAFGT SAELCVDERL  540
RIANDGIIVV CMEILRPQNI NGSSQVSLKG KIRITTRCLW LDKGKLLDAL YKAAHAALSS  600
CPVNCPLTHM ERIVSEVLRK MVRKYSSKRP EVIAVAVENT VGVLTEDFKT KLSGTSLSGF  660
GLSSKNKSSG AHLGKILSWK SASADDEATN ATNTLGNQTE NVAEGENSED EQSVPMADAI  720
PGPEKLSPSL GSPTSKSTLE SLKGSSTVQP PEVIITSENS SKNAKVSVEE NKASETKVVA  780
RTPSKRNKWK PEEIKRLITK RAELDDRFQA VKGRMILWEE VSSSLLDHGI TRSPAQCKSL  840
WASLVQKYEE SRTNEKSKRN WPYFTAVDKI LSIREAA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63420.10.0Trihelix family protein