PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_04.1921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 118aa MW: 12789.1 Da PI: 8.5191 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 47.5 | 4.1e-15 | 11 | 62 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 ++ Y ClkN+ + h vDGC f+++ + ++ l+C C CHR+FH r+ evm.model.AsparagusV1_04.1921 11 NIIYGVCLKNQTMGTAHHQVDGCLRFVED---QERPHLLRCRNCACHRSFHWRQI 62 578************************98...3369***************9975 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence |
MELEMEETII NIIYGVCLKN QTMGTAHHQV DGCLRFVEDQ ERPHLLRCRN CACHRSFHWR 60 QIYVGHGRGH GGGRGVEAGR GQGRGRGRGR GRGRGRGNGG GGDDDDASST SSTITNE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 89 | RGQGRGRGRG |
2 | 84 | 93 | RGQGRGRGRG |
3 | 84 | 94 | RGRGRGRGRGR |
4 | 86 | 95 | RGQGRGRGRG |
5 | 86 | 96 | RGRGRGRGRGR |
6 | 88 | 97 | RGQGRGRGRG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28917.1 | 2e-08 | ZF-HD family protein |