PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1813
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family LBD
Protein Properties Length: 255aa    MW: 27602.2 Da    PI: 6.9126
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1813genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260123.21.3e-38911911100
                         DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 
                                    +C aCk+lrrkC+++Cv+apyf++eq +++fa++hk+FGasn +kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++
  evm.model.AsparagusV1_04.1813  91 PCGACKFLRRKCVQGCVFAPYFCHEQgAAHFAAIHKVFGASNASKLLSHLPASDRLEAALTISYEAQARLQDPIYGCVSH 170
                                    7*************************89**************************************************** PP

                         DUF260  80 ilklqqqleqlkaelallkee 100
                                    i++lqqq+ +l+a+la+lk++
  evm.model.AsparagusV1_04.1813 171 IFALQQQVVNLQAQLASLKAQ 191
                                    ****************99886 PP

Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    
MVQVSRGGWS GWSLVAQWCR GGGWWKRTLV SGIVEAAWVD MALVEWRWLS LVERCLGSVD  60
AVSAGVGEQH LGSDALWSMD AVSGGAGFGS PCGACKFLRR KCVQGCVFAP YFCHEQGAAH  120
FAAIHKVFGA SNASKLLSHL PASDRLEAAL TISYEAQARL QDPIYGCVSH IFALQQQVVN  180
LQAQLASLKA QTAQNSQVLL SNPSNSESML CYNNNYVHPN MISNNNYGIG EGSSYAVDME  240
DLQSVAYAYL YRHT*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.18e-56LBD family protein