PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1770

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

C2H2

Protein Properties

Length: 475aa MW: 53444.7 Da PI: 4.907

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1770	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.0004	160	175	1	16
EEETTTTEEESSHHHH CS zf-C2H2 1 ykCpdCgksFsrksnL 16 y+Cp+Cg++Fs + L evm.model.AsparagusV1_04.1770 160 YVCPNCGRRFSAFDAL 175 9*********987777 PP

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence
MSIEPFNRLV RLAARAFYDD ITMKGDNQPK TGRGDNRGMA VVVLDALTRR QWVREEDLAK 60 ALKLHSKQLR RTLRFFEEEK LVTRDHRKES AKGAKIYSAA VAATADQKIT KEGEEKMKMH 120 THSYCCLDYA QIYDVVRYRI HRMKKKLKDE LDDRNTVQEY VCPNCGRRFS AFDALQLVSP 180 NDEYFHCENC NGELVAVSDK LAAEEMGDGD ENARRRRQEK MKDMLQKIEE QLKPLTLQLA 240 RVKDLPIPEF GTLQAWEARA NAAARISGDS SANDSSRSSQ AQGYAGTPMP FLGETKVEVA 300 LSGVEAIEER AVADTKPTSV KVLPPWMIKQ GMNLSKEQRG EVKAELSTDQ MSQPDDEKKA 360 KAESEDEKSF QDEYVKAYYA ALVQRQEEQA AASKRAQQVE NNGTSTSYLS NVVSETPSER 420 QVGMKEKREE DDDVEWEEAP PAGKAFKVAD LNIQADYADA SGGDDDDGID WEEG*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence

MSIEPFNRLV RLAARAFYDD ITMKGDNQPK TGRGDNRGMA VVVLDALTRR QWVREEDLAK  60
ALKLHSKQLR RTLRFFEEEK LVTRDHRKES AKGAKIYSAA VAATADQKIT KEGEEKMKMH  120
THSYCCLDYA QIYDVVRYRI HRMKKKLKDE LDDRNTVQEY VCPNCGRRFS AFDALQLVSP  180
NDEYFHCENC NGELVAVSDK LAAEEMGDGD ENARRRRQEK MKDMLQKIEE QLKPLTLQLA  240
RVKDLPIPEF GTLQAWEARA NAAARISGDS SANDSSRSSQ AQGYAGTPMP FLGETKVEVA  300
LSGVEAIEER AVADTKPTSV KVLPPWMIKQ GMNLSKEQRG EVKAELSTDQ MSQPDDEKKA  360
KAESEDEKSF QDEYVKAYYA ALVQRQEEQA AASKRAQQVE NNGTSTSYLS NVVSETPSER  420
QVGMKEKREE DDDVEWEEAP PAGKAFKVAD LNIQADYADA SGGDDDDGID WEEG*