PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1468

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

SBP

Protein Properties

Length: 317aa MW: 35441 Da PI: 9.339

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1468	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.3	2.6e-39	85	160	2	77
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gC +dls+++eyhrrhkvCevhsk++ v+v g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q evm.model.AsparagusV1_04.1468 85 CLVDGCVSDLSKCREYHRRHKVCEVHSKTAIVVVGGREQRFCQQCSRFHLLLEFDEVKRSCRKRLEGHNRRRRKPQ 160 **************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence
MRDFPFSGGV VRITVEHGGW LGQVEASWPV LLSSVLPNCV RGVRRTGGKK DCLFDLKLVE 60 MVSSSSSGSS KRARALSSGG PVASCLVDGC VSDLSKCREY HRRHKVCEVH SKTAIVVVGG 120 REQRFCQQCS RFHLLLEFDE VKRSCRKRLE GHNRRRRKPQ LCSLNRESFL TNLQGFTSYK 180 SNWAPIIKAE EVPQNHQNYS HFPISSNGIY KDRKKFPFLQ DNAQEHHQPL LNKTIRMLDS 240 DGALSLLSTP EARSSYINNN PSHQPLAPVN GWAFGSSSSN NVSPTEFLYS EMGNEHVGAM 300 FTSENSDANF HALSWQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	159	KRSCRKRLEGHNRRRRKP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	7e-43	SBP family protein