PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1341
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 162aa    MW: 18458.6 Da    PI: 10.2599
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1341genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.91.3e-0952101948
                                    HHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS
                Myb_DNA-binding   9 dellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 
                                    d ll + vk++ g++Wk+I +++           k+Rt+ qc +rwqk+l
  evm.model.AsparagusV1_04.1341  52 DALLTESVKKHNGKNWKSIDKCIIvdelciaklfKNRTDVQCLHRWQKVL 101
                                    6789999****************************************986 PP

2Myb_DNA-binding55.11.8e-17107151146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    +g+WT+eEd+l++  vk++G+++W+ Ia+ ++ gR +kqc++r++ 
  evm.model.AsparagusV1_04.1341 107 KGAWTKEEDDLILSQVKLHGTKNWSVIAKSLP-GRIGKQCRERLFR 151
                                    79******************************.**********975 PP

Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    
MAKKAAWSIS SCKPGNGVLF LRVDNLDTYW QSDGAQPHLV NIQFQKKVKL QDALLTESVK  60
KHNGKNWKSI DKCIIVDELC IAKLFKNRTD VQCLHRWQKV LDPELVKGAW TKEEDDLILS  120
QVKLHGTKNW SVIAKSLPGR IGKQCRERLF RQLPSVSLHM I*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.15e-35MYB family protein