PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_04.1341 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 162aa MW: 18458.6 Da PI: 10.2599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.9 | 1.3e-09 | 52 | 101 | 9 | 48 |
HHHHHHHHHHTTTT-HHHHHHHHT..........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 9 dellvdavkqlGggtWktIartmg..........kgRtlkqcksrwqkyl 48 d ll + vk++ g++Wk+I +++ k+Rt+ qc +rwqk+l evm.model.AsparagusV1_04.1341 52 DALLTESVKKHNGKNWKSIDKCIIvdelciaklfKNRTDVQCLHRWQKVL 101 6789999****************************************986 PP | |||||||
2 | Myb_DNA-binding | 55.1 | 1.8e-17 | 107 | 151 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+WT+eEd+l++ vk++G+++W+ Ia+ ++ gR +kqc++r++ evm.model.AsparagusV1_04.1341 107 KGAWTKEEDDLILSQVKLHGTKNWSVIAKSLP-GRIGKQCRERLFR 151 79******************************.**********975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence |
MAKKAAWSIS SCKPGNGVLF LRVDNLDTYW QSDGAQPHLV NIQFQKKVKL QDALLTESVK 60 KHNGKNWKSI DKCIIVDELC IAKLFKNRTD VQCLHRWQKV LDPELVKGAW TKEEDDLILS 120 QVKLHGTKNW SVIAKSLPGR IGKQCRERLF RQLPSVSLHM I* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G11510.1 | 5e-35 | MYB family protein |