PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_04.1300
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 274aa    MW: 30156.7 Da    PI: 8.5467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_04.1300genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.7e-161462148
                                   TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                                   +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl
  evm.model.AsparagusV1_04.1300 14 KGPWSPEEDTKLKEFIEKYGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                                   79*********************************************97 PP
2Myb_DNA-binding37.74.8e-1269111246
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    g ++ +Ed ++  +++  G++ W+ Ia+ ++ gRt++++k++w++
  evm.model.AsparagusV1_04.1300  69 GEFSDDEDRIICTLFATIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                                    789******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    
MGRAPCCDKA NVKKGPWSPE EDTKLKEFIE KYGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDDEDRIIC TLFATIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGI  120
SPPVSSANNS SSSQRKSTST NQQQLLFPSS QSKPVFSGLX XXXASLLQAP FSSLNSSHNQ  180
YQISFGGAEQ SCSSSDMSYG NEQQLGFESY LYAGLGWGDH QAQPQAQPPL EYGYEEIKNL  240
INGGAGADAD ATVYNDPEDS FKAQGRGSVM YRF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-77MYB family protein