PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1229

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 655aa MW: 74381.4 Da PI: 5.2258

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1229	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.2	1.5e-13	455	500	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 +h ErrRR+++N++f Lr+l+P+ + K++Ka+iL +++Y+k+L evm.model.AsparagusV1_04.1229 455 NHVLSERRRREKLNEKFLILRSLVPSiS------KVDKASILGDTIDYVKEL 500 68899*******************66......**************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MEAGGEIQEG LQENHFKQQL AATVRNLRWS YAIFWSASSR QQGVLSWANG YYNGDIKTRK 60 TTQPMEFKAD QLGLQRSEQL RDLYESLSAA ENNQQTRRPS ASLSPEDLTS TEWYYLVCMS 120 FTFNPGQGLP GRALANNQHI WLNNAQFADS RTFSRSLLAK SASIQTVVCF PFMDGILELG 180 TTEQVLEDSV LVQQVKTTFW DFPIPVCSEQ SISSSPNVEK DEEETIHPTL DHDQLIEDAM 240 ELENDNLIPE DILLPFAFNF PSYAPTKNVD AIHDEVEELN PKICEEIQNG SPGGSSNDYC 300 TNHHTDDSLR MDELQSCMSQ SFVNSQRILS SPRGERIRNH VLDCLQEGNN AYLTSLDLEG 360 DETHYERTLS VILTNSKGSV SDSCFLNGSQ ASNFTHWRRD FTIPKPTSDT PQKLLKKILV 420 GASWIQDYLR SLKPPEENGI RNNVCKPEGD DTSGNHVLSE RRRREKLNEK FLILRSLVPS 480 ISKVDKASIL GDTIDYVKEL KRRVEELESC KERGEVEARE RRKNLEVAEE TSDSHRNYEG 540 TNRRTALANK RKACDIEENK IEHDHWFRSK DNAVDINITM IEKEILLEMN CPWRDCLLLE 600 IVDAMSNLHL DAHSVQSSIL NGKLVLRLKA KHRSLVVVSP GMVKRALQRV VNKC*

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MEAGGEIQEG LQENHFKQQL AATVRNLRWS YAIFWSASSR QQGVLSWANG YYNGDIKTRK  60
TTQPMEFKAD QLGLQRSEQL RDLYESLSAA ENNQQTRRPS ASLSPEDLTS TEWYYLVCMS  120
FTFNPGQGLP GRALANNQHI WLNNAQFADS RTFSRSLLAK SASIQTVVCF PFMDGILELG  180
TTEQVLEDSV LVQQVKTTFW DFPIPVCSEQ SISSSPNVEK DEEETIHPTL DHDQLIEDAM  240
ELENDNLIPE DILLPFAFNF PSYAPTKNVD AIHDEVEELN PKICEEIQNG SPGGSSNDYC  300
TNHHTDDSLR MDELQSCMSQ SFVNSQRILS SPRGERIRNH VLDCLQEGNN AYLTSLDLEG  360
DETHYERTLS VILTNSKGSV SDSCFLNGSQ ASNFTHWRRD FTIPKPTSDT PQKLLKKILV  420
GASWIQDYLR SLKPPEENGI RNNVCKPEGD DTSGNHVLSE RRRREKLNEK FLILRSLVPS  480
ISKVDKASIL GDTIDYVKEL KRRVEELESC KERGEVEARE RRKNLEVAEE TSDSHRNYEG  540
TNRRTALANK RKACDIEENK IEHDHWFRSK DNAVDINITM IEKEILLEMN CPWRDCLLLE  600
IVDAMSNLHL DAHSVQSSIL NGKLVLRLKA KHRSLVVVSP GMVKRALQRV VNKC*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	460	465	ERRRRE
2	461	466	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.1	1e-148	bHLH family protein