PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1182

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 349aa MW: 38668.2 Da PI: 6.1011

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1182	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.8	5.2e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++lv++++++G g+W+ ++ ++R++k+c++rw +yl evm.model.AsparagusV1_04.1182 14 KGPWTPEEDKKLVEYIQEHGHGSWRNLPKNADLNRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	52.9	8.6e-17	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+ l+++++ lG++ W++Ia ++ gRt++++k++w+++l evm.model.AsparagusV1_04.1182 67 RGKFTEEEERLIIHLHSVLGNK-WSAIATRLS-GRTDNEIKNYWNTHL 112 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MGRSPCCDEI GVKKGPWTPE EDKKLVEYIQ EHGHGSWRNL PKNADLNRCG KSCRLRWTNY 60 LRPDIKRGKF TEEEERLIIH LHSVLGNKWS AIATRLSGRT DNEIKNYWNT HLKKKLLLMG 120 IDPVTHRRRT NLDILSNLPS LLAAVNLGNL AAPSWDNALR IQADAAQLAK VQIMQSLIQQ 180 LMTSNSSLSI DPMSLLGSSL SLGNNNQFGD LLQLNRQLEA VLNGSLSLAQ DSTPPIAPLN 240 LSNLSDNSMV FNNLQGYSEQ ENASKDQMSV NTYANVLTAT STTPSLVSAS PENVVSDKMQ 300 DQSHSNNDVS ANSSSSAQFE AWEGHNNDDD FGWKDILEQI SWSNNNTL*

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MGRSPCCDEI GVKKGPWTPE EDKKLVEYIQ EHGHGSWRNL PKNADLNRCG KSCRLRWTNY  60
LRPDIKRGKF TEEEERLIIH LHSVLGNKWS AIATRLSGRT DNEIKNYWNT HLKKKLLLMG  120
IDPVTHRRRT NLDILSNLPS LLAAVNLGNL AAPSWDNALR IQADAAQLAK VQIMQSLIQQ  180
LMTSNSSLSI DPMSLLGSSL SLGNNNQFGD LLQLNRQLEA VLNGSLSLAQ DSTPPIAPLN  240
LSNLSDNSMV FNNLQGYSEQ ENASKDQMSV NTYANVLTAT STTPSLVSAS PENVVSDKMQ  300
DQSHSNNDVS ANSSSSAQFE AWEGHNNDDD FGWKDILEQI SWSNNNTL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	1e-84	MYB family protein