PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_04.1016

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

M-type_MADS

Protein Properties

Length: 440aa MW: 47564.3 Da PI: 4.5841

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_04.1016	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	42	1.2e-13	12	57	2	46
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEE.EEE-TTSEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevav.iifsstgkl 46 +i+n snr+ t+ kR++ + KKA+ELS+LC++ + ii stg + evm.model.AsparagusV1_04.1016 12 FISNPSNRNNTYRKRKEALKKKAYELSTLCQVPLLTtIINPSTGDV 57 8******************************987641455556665 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MGRPKSKVQL NFISNPSNRN NTYRKRKEAL KKKAYELSTL CQVPLLTTII NPSTGDVDFW 60 PGDSQQAHDI ISSYQSLSAD ITDNKNTLDV KSFLKEQINK MMSEKFRQLD SKIEVVNERI 120 QLLQNGNLEH EKPLLSYPST QSVLNSFGFN TPTPSCGAFG DEVLRGNAGG GANRNMSNGF 180 GPSFRGPSSC GLTKGASTSS VGFDSRIKSV TERMQMLQHA STEQEKTGFG QESMDDGNDG 240 AGFNYPQMDS ELNSFGLNPP SYSSGMFGNE ALIGNGYGGA YYSNFDAYGS NFLTPLSSGL 300 ISGASTSSLG FDSKFKAVSE RIQLLQNGSF EQEIVGFLQE FMGNDDDSTG FKYPQMDSAP 360 NSLGPNPPVH SSGVLGNDIL MGNGDGGSHC NSFYDFDPSF QASWSSGLMN GSSTSSVGFD 420 GWEMSKEESW QEMGYSFGC*

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MGRPKSKVQL NFISNPSNRN NTYRKRKEAL KKKAYELSTL CQVPLLTTII NPSTGDVDFW  60
PGDSQQAHDI ISSYQSLSAD ITDNKNTLDV KSFLKEQINK MMSEKFRQLD SKIEVVNERI  120
QLLQNGNLEH EKPLLSYPST QSVLNSFGFN TPTPSCGAFG DEVLRGNAGG GANRNMSNGF  180
GPSFRGPSSC GLTKGASTSS VGFDSRIKSV TERMQMLQHA STEQEKTGFG QESMDDGNDG  240
AGFNYPQMDS ELNSFGLNPP SYSSGMFGNE ALIGNGYGGA YYSNFDAYGS NFLTPLSSGL  300
ISGASTSSLG FDSKFKAVSE RIQLLQNGSF EQEIVGFLQE FMGNDDDSTG FKYPQMDSAP  360
NSLGPNPPVH SSGVLGNDIL MGNGDGGSHC NSFYDFDPSF QASWSSGLMN GSSTSSVGFD  420
GWEMSKEESW QEMGYSFGC*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05860.2	1e-10	M-type_MADS family protein