PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_03.947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 237aa MW: 25859.4 Da PI: 7.4169 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36 | 1.2e-11 | 80 | 125 | 5 | 54 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + rE+ RRdr+N++f eL ++l + ++K +Ka+iL Av+ + +L evm.model.AsparagusV1_03.947 80 KACREKMRRDRLNDKFLELGSILEPG----NPKTDKAAILSDAVRMVTQL 125 678*******************9986....8**************99988 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence |
MASPENSSWG FDYPLIDNIS VAGGDFGVPG NGLLWSPQGI NSTPSASMET GGNLVDSAAV 60 KESGFKKRVR SESGSVPGSK ACREKMRRDR LNDKFLELGS ILEPGNPKTD KAAILSDAVR 120 MVTQLRSEAQ KLKDSNENLM EKIKELKSEK NELRDEKQRL KQEKENLEQQ VKLLNSRPSF 180 MPHPPVIPAA FAPQGQTGTH KMMMPVIGYP GYPMWQFMPP ADVDTSQDAA SCPPVA* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G54680.1 | 1e-92 | bHLH family protein |