PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.935 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 34472.6 Da PI: 7.5993 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 79 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll ++++++G g W++++++ g++R++k+c++rw++yl evm.model.AsparagusV1_03.935 79 KGAWSKEEDDLLRKCIEMYGEGKWSSVPNKAGLKRCRKSCRLRWLNYL 126 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 132 | 177 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++ ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++l evm.model.AsparagusV1_03.935 132 RGKFGEDEVDLIIRLHKLLGNR-WSLIAGRIP-GRTANDIKNFWNSHL 177 89********************.*********.************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence |
MKLDLPPFLS ALPPVLLLLF LEIFLLLLVE LHVIVVVSAA ASHHRSQKPR RRRAEFFDQL 60 EASTKLTMEP ELKPAGVRKG AWSKEEDDLL RKCIEMYGEG KWSSVPNKAG LKRCRKSCRL 120 RWLNYLSPAI HRGKFGEDEV DLIIRLHKLL GNRWSLIAGR IPGRTANDIK NFWNSHLGKK 180 TEAIDTKNKI RVVKPQPRRV ARSRACGPKD IMQKDEGQDP NNSRALPENN IAEHEEESLN 240 EFMGSSGHDE ELGGLIPYNS SHENLSSLDF GFSYEVEEIM DGALFLRGVE EWEKLLEDTI 300 CLG* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 3e-60 | MYB family protein |