PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm.model.AsparagusV1_03.908 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 228aa MW: 25777.3 Da PI: 6.3038 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.1 | 1.8e-14 | 54 | 100 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++ErrRR+++N+++++Lr+l+P+ +K+sK ++L A++YI++Lq evm.model.AsparagusV1_03.908 54 KNLAAERRRRSKLNHRLFTLRSLVPNI-----TKMSKESTLIDAMDYIHNLQ 100 56689*********************7.....7******************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence |
MPRWPRDQAM EFDVMNFADS MLDGCYGDGG GEGEFRKEQS AAAAEKGEER YKSKNLAAER 60 RRRSKLNHRL FTLRSLVPNI TKMSKESTLI DAMDYIHNLQ TQINDLKLEL SKICEEEDRT 120 KQGSTSSTES TAPPEMARYQ GRVELNPMGQ NKFHVKIMCN KRPGGFIKLL DALSRNGLEI 180 TEISSFAFSG FDQIVFCIEA RGDKEIPISE LRKLLMAIVE VSEENNK* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16910.1 | 2e-23 | bHLH family protein |