PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.863
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 334aa    MW: 37577.9 Da    PI: 6.2344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.863genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.48e-191461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++l+++++++G g+W+t ++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_03.863 14 KGPWTPEEDQKLINYIQKHGHGSWRTLPKNAGLARCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding54.62.4e-1767111147
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   rgr++ eE+e +++++  lG++ W++Ia++++ gRt++++k++w+++
  evm.model.AsparagusV1_03.863  67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111
                                   89********************.*********.************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    
MGRTPCCDKN GLKKGPWTPE EDQKLINYIQ KHGHGSWRTL PKNAGLARCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKRLLRMG  120
IDPVTHSPRL DLLDLSTLLS NPNLFNASQF IDISRLLGVE TPMNSDLLRF ATNSLSSQGE  180
DAINSSQIQD PFQSFQTHQI QEVPPCTTSS AHFFSDSNLM QPNEQAYNLW QANGMPCNFS  240
ENLVHATSGV GYDNLEQSVP QFLSDNSNFH LSSNQNYTTV TSVLSTPAGS SPTTQLNSSS  300
TYINSSTEDE RDSYCSELFK FQIPDLLDVS EFM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-102MYB family protein