PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.81

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 424aa MW: 46054.6 Da PI: 6.2617

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.81	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.1	3.6e-17	35	80	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l evm.model.AsparagusV1_03.81 35 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 80 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence
MAVGGLYLPK LLGLQRCGKS CRLRWTNYLR PDIKRGKFTL QEEQTIIQLH ALLGNRWSAI 60 ATHLPKRTDN EIKNYWNTHL KKRLAKMGID PVTHKPRSET SGLLTSNSDG DYSKKSSANL 120 SHIAQWESAR LEAEARLVRE SKLRAPSALP VIYSPPHPQH QRNKSAAMAT CLHDSQVTDM 180 VTQQGEPCRS KSAGGCSLRL GGGGGHVDLQ SPTSTLSFSD TSMVLPIISM GFAHQNSTTL 240 LCHDQAHLGN SEGLEVEQHF EIKCFDKPLI RLVSDNKDHR HRTMGGAGTG GLLPPQVAAG 300 LPYRDTSNIA FGAELSSWLI PGSTINCSTM RFSTGGDFGP PPPLLAASGG GLYTEMLLNS 360 SHNAAGADNE EDSDLVDVDH GESCVEEEDD DDEDEDEGNN YWNNILDLVK LSPPSNSPPS 420 PVF*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence

MAVGGLYLPK LLGLQRCGKS CRLRWTNYLR PDIKRGKFTL QEEQTIIQLH ALLGNRWSAI  60
ATHLPKRTDN EIKNYWNTHL KKRLAKMGID PVTHKPRSET SGLLTSNSDG DYSKKSSANL  120
SHIAQWESAR LEAEARLVRE SKLRAPSALP VIYSPPHPQH QRNKSAAMAT CLHDSQVTDM  180
VTQQGEPCRS KSAGGCSLRL GGGGGHVDLQ SPTSTLSFSD TSMVLPIISM GFAHQNSTTL  240
LCHDQAHLGN SEGLEVEQHF EIKCFDKPLI RLVSDNKDHR HRTMGGAGTG GLLPPQVAAG  300
LPYRDTSNIA FGAELSSWLI PGSTINCSTM RFSTGGDFGP PPPLLAASGG GLYTEMLLNS  360
SHNAAGADNE EDSDLVDVDH GESCVEEEDD DDEDEDEGNN YWNNILDLVK LSPPSNSPPS  420
PVF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15310.1	4e-72	MYB family protein