PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.768

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 347aa MW: 38304.3 Da PI: 6.8686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.768	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.1	4.3e-10	186	234	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++++P + +k Ka +L + ++Y++sLq evm.model.AsparagusV1_03.768 186 NSHSLAERVRREKISERMRLLQDIVPGC----NKITGKAVMLDEIINYVQSLQ 234 58************************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 347 aa Download sequence
MRIGCFKCIY RDVTMSVQKE ISSMEVPCSS GVAAEQFMAT DWDPLHSVSG STGFSSYNVG 60 NSNIERLPSL SFFGSDSLSD LMNSFGLPEN TQMASVVCPQ EFPSGTEHGA EKNPKGKKRK 120 KFVECGAVQN AKTEQEKETQ AEPLKSQLEK DEKKPKNEVS PGVKETGNGA KEEYIHIRAK 180 RGQATNSHSL AERVRREKIS ERMRLLQDIV PGCNKITGKA VMLDEIINYV QSLQRQVEFL 240 SMKLAAVNPE LSFDIEQIFT KENPHSRHGS SPSLNYSQLQ PGITIPSLPN SRVLLRTSSS 300 PQISPIAQIP NSWDNEFQNA IQMGFIPNLA HDGTELNPNG SMKVEL*

Sequence ? help Back to Top

Protein Sequence Length: 347 aa Download sequence

MRIGCFKCIY RDVTMSVQKE ISSMEVPCSS GVAAEQFMAT DWDPLHSVSG STGFSSYNVG  60
NSNIERLPSL SFFGSDSLSD LMNSFGLPEN TQMASVVCPQ EFPSGTEHGA EKNPKGKKRK  120
KFVECGAVQN AKTEQEKETQ AEPLKSQLEK DEKKPKNEVS PGVKETGNGA KEEYIHIRAK  180
RGQATNSHSL AERVRREKIS ERMRLLQDIV PGCNKITGKA VMLDEIINYV QSLQRQVEFL  240
SMKLAAVNPE LSFDIEQIFT KENPHSRHGS SPSLNYSQLQ PGITIPSLPN SRVLLRTSSS  300
PQISPIAQIP NSWDNEFQNA IQMGFIPNLA HDGTELNPNG SMKVEL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	121	KKRKK
2	117	156	KKRKKFVECGAVQNAKTEQEKETQAEPLKSQLEKDEKKPK
3	118	157	KKRKKFVECGAVQNAKTEQEKETQAEPLKSQLEKDEKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10120.1	3e-57	bHLH family protein