PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.651 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 163aa MW: 19272 Da PI: 7.1462 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.4 | 5e-18 | 62 | 116 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++++eq e Le++++ + +++++e+ eLA++l+L+ rqV vWFqNrR + k evm.model.AsparagusV1_03.651 62 RKKLRLSTEQSEFLENAYRAHATLTQDEKLELAEELNLSPRQVEVWFQNRRSRTK 116 677889**********************************************988 PP | |||||||
2 | HD-ZIP_I/II | 99.4 | 3.4e-32 | 62 | 150 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81 +kk+rls+eq+++LE+ ++++ +L++++K ela+eL+l+prqv+vWFqnrR Rtk kq+ ++ e+Lk+ +++l+een+rL+ evm.model.AsparagusV1_03.651 62 RKKLRLSTEQSEFLENAYRAHATLTQDEKLELAEELNLSPRQVEVWFQNRRSRTKFKQMKMEREYLKKLCESLTEENQRLK 142 69******************************************************************************* PP HD-ZIP_I/II 82 keveeLre 89 +e+ eL evm.model.AsparagusV1_03.651 143 REMLELLM 150 ***99974 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence |
MEIEEEYCNT ELCLGIGREP TSKRNSEQIS SLQINFKEVD QKERKPSIKG GGGEENKPVS 60 IRKKLRLSTE QSEFLENAYR AHATLTQDEK LELAEELNLS PRQVEVWFQN RRSRTKFKQM 120 KMEREYLKKL CESLTEENQR LKREMLELLM LVKCWQKNTQ EE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 111 | 119 | RRSRTKFKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 9e-31 | HD-ZIP family protein |