PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.642
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 231aa    MW: 26198.8 Da    PI: 8.6296
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.642genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.3e-18653148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++lv +++++G g+W+  +++ g+ R++k+c++rw +yl
  evm.model.AsparagusV1_03.642  6 KGAWTPEEDLRLVTYIHKYGHGNWRNLPKYAGLARCGKSCRLRWINYL 53
                                  79********************************************97 PP
2Myb_DNA-binding47.44.4e-1559104148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg+ ++eE+e +++++ +lG++ W++Ia++++ gRt++++k+ w+++l
  evm.model.AsparagusV1_03.642  59 RGNISKEEEEMIIRLHGLLGNK-WSKIAACLP-GRTDNEIKNVWNSHL 104
                                   7899******************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    
MGGLKKGAWT PEEDLRLVTY IHKYGHGNWR NLPKYAGLAR CGKSCRLRWI NYLRPGLKRG  60
NISKEEEEMI IRLHGLLGNK WSKIAACLPG RTDNEIKNVW NSHLKKRFKS KGSKPSCKKP  120
KKVSNSSKSV CDQGNTSSEN SKMVLIDFEE CLMLKEQDPE YTNTSSTASS QTDSNPKISS  180
PSFSCSKKFD EENKFWIELE ECLTLPDLFD ISEFDFKISS SSLENELELC *
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.15e-55MYB family protein