PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.610

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB

Protein Properties

Length: 727aa MW: 83160.9 Da PI: 8.9546

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.610	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1e-13	442	487	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT++Ed l av+ +G ++W ++a+ + gRt+ qc +rw+k l evm.model.AsparagusV1_03.610 442 KNWTEDEDFMLRTAVEIFGEHNWQLVASNLE-GRTGTQCSNRWLKTL 487 58***************************.*********9975 PP
2	Myb_DNA-binding	54.7	2.4e-17	495	539	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW+ +Ed++l+ av ++G ++Wk+Iar + gRt qc++rw++ evm.model.AsparagusV1_03.610 495 GRWSVDEDKRLKVAVMLFGAKNWKKIARFAP-GRTQVQCRERWLNC 539 8****************************.*********996 PP
3	Myb_DNA-binding	45.7	1.5e-14	548	589	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WTteEd++l+ a+ ++G W+++a +++ Rt++qc rw evm.model.AsparagusV1_03.610 548 AWTTEEDDKLKAAIDEHGYS-WSKVATCVP-PRTDNQCMRRWKY 589 7***************99.*****.9********75 PP

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence
MPLSSSSDSD GDGDDDREML RRILAKTGTS AMEIPNDSDS DSSGSDVLGW FRQIQEKFSI 60 NSDGPDPFPV IKPLRSVAPS DSDDDDVMET MAAIHRRFDQ YENDVMKDQD QIVMQETNTT 120 VTDITSQQEI TDILSKDLNC THQLRNSSFT GLHQLVDISG DVPMKALTYS QFPKSAQNFV 180 SALKKNRSCQ RFIRRKLIEI EAKIEESKRL KERIKCLMDF QLSCKRKIGH IICQKKDPRV 240 RLISMQKQRT SKAMKGESAT KIPALCHGPP ENSHVSKYKM VLKRFPLPFK KQHWSVVEKE 300 NLAKGLKQQY QEMLLLNSMN LESDLESSMN PDMMSAILSN DLEVTSEKIR SFLPLVNWDR 360 LASMYVSGRS GLECESRWLN CEDPLINYSP WTILEDKKLL LIVQERGIYN WIDIAVMLGT 420 RRTPFQCLAR YQRSLNPHIL NKNWTEDEDF MLRTAVEIFG EHNWQLVASN LEGRTGTQCS 480 NRWLKTLNPE RRKVGRWSVD EDKRLKVAVM LFGAKNWKKI ARFAPGRTQV QCRERWLNCL 540 DPSLKLEAWT TEEDDKLKAA IDEHGYSWSK VATCVPPRTD NQCMRRWKYL FPEEVSLLRE 600 ARRLKKTVLI SNFVDRESER PLIGPGDFSS LVSTPAECGN SSKGSKKRSR EGAEREKQRE 660 VSRNKKSKKS RAKSRRCSEE NMSGNNSLNS GEAPFTDSLI MLKMGLLGGE GREFQGGINQ 720 ITLQSI*

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence

MPLSSSSDSD GDGDDDREML RRILAKTGTS AMEIPNDSDS DSSGSDVLGW FRQIQEKFSI  60
NSDGPDPFPV IKPLRSVAPS DSDDDDVMET MAAIHRRFDQ YENDVMKDQD QIVMQETNTT  120
VTDITSQQEI TDILSKDLNC THQLRNSSFT GLHQLVDISG DVPMKALTYS QFPKSAQNFV  180
SALKKNRSCQ RFIRRKLIEI EAKIEESKRL KERIKCLMDF QLSCKRKIGH IICQKKDPRV  240
RLISMQKQRT SKAMKGESAT KIPALCHGPP ENSHVSKYKM VLKRFPLPFK KQHWSVVEKE  300
NLAKGLKQQY QEMLLLNSMN LESDLESSMN PDMMSAILSN DLEVTSEKIR SFLPLVNWDR  360
LASMYVSGRS GLECESRWLN CEDPLINYSP WTILEDKKLL LIVQERGIYN WIDIAVMLGT  420
RRTPFQCLAR YQRSLNPHIL NKNWTEDEDF MLRTAVEIFG EHNWQLVASN LEGRTGTQCS  480
NRWLKTLNPE RRKVGRWSVD EDKRLKVAVM LFGAKNWKKI ARFAPGRTQV QCRERWLNCL  540
DPSLKLEAWT TEEDDKLKAA IDEHGYSWSK VATCVPPRTD NQCMRRWKYL FPEEVSLLRE  600
ARRLKKTVLI SNFVDRESER PLIGPGDFSS LVSTPAECGN SSKGSKKRSR EGAEREKQRE  660
VSRNKKSKKS RAKSRRCSEE NMSGNNSLNS GEAPFTDSLI MLKMGLLGGE GREFQGGINQ  720
ITLQSI*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18100.1	1e-179	MYB family protein