PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.330

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 350aa MW: 38965.8 Da PI: 8.5568

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.330	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.5e-12	152	203	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N+ ++ Lr+++P++ + ++ + a+i+ A++++k+L+ evm.model.AsparagusV1_03.330 152 QRMTHIAVERNRRKLMNEYLAVLRSIMPPS---YVQRGDQASIVGGAINFVKELE 203 79**************************...9****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence
MANNKTIHVR LRKKPPRYMS TCCPPPPPHV ATPPSCLLSL PLSLSLSRPS LKTTTITSVL 60 SSPILNTREL YMALEAVVFQ QDPFGASLKE LCGYDFGGLL LECGQEKEFD QWGLDSASPA 120 AVKEEEEVVV VERKKRRRRS RSCKNKEEVE SQRMTHIAVE RNRRKLMNEY LAVLRSIMPP 180 SYVQRGDQAS IVGGAINFVK ELEQHLQTLE AQRRIKLGRD SPEPNSSSSS PLTDFFTFPQ 240 YSTTSNNNAI ESTAKNQSAM ADIEVSMIET HANLKVLSKR RPKQLLKMVA GLQNLRFTVL 300 HLNVTTVDQM VLYSVSLKVE DDCLFKSVDD IAAAVNQLVG VIQEDSACS*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence

MANNKTIHVR LRKKPPRYMS TCCPPPPPHV ATPPSCLLSL PLSLSLSRPS LKTTTITSVL  60
SSPILNTREL YMALEAVVFQ QDPFGASLKE LCGYDFGGLL LECGQEKEFD QWGLDSASPA  120
AVKEEEEVVV VERKKRRRRS RSCKNKEEVE SQRMTHIAVE RNRRKLMNEY LAVLRSIMPP  180
SYVQRGDQAS IVGGAINFVK ELEQHLQTLE AQRRIKLGRD SPEPNSSSSS PLTDFFTFPQ  240
YSTTSNNNAI ESTAKNQSAM ADIEVSMIET HANLKVLSKR RPKQLLKMVA GLQNLRFTVL  300
HLNVTTVDQM VLYSVSLKVE DDCLFKSVDD IAAAVNQLVG VIQEDSACS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	139	RKKRRRR
2	134	139	KKRRRR
3	153	164	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-80	bHLH family protein