PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.3232
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB_related
Protein Properties Length: 358aa    MW: 39427.4 Da    PI: 6.8512
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.3232genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-1699142146
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                    rg+++++E+ l+++++  lG++ W+ Ia++++ gRt++++k++w++
  evm.model.AsparagusV1_03.3232  99 RGSFSPQEEALIIELHSVLGNR-WAQIAKHLP-GRTDNEVKNFWNS 142
                                    899*******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MSQPTVMGLS KAGDKGGFWD VAADAFDDFV GGGSSLACGV FLMAYMFSLV SGQPMSINQK  60
DCVRHRARIV ALFLSEGLQR CGKSCRLRWI NYLRPDLKRG SFSPQEEALI IELHSVLGNR  120
WAQIAKHLPG RTDNEVKNFW NSTIKKKLII SHSHHHAMDA RRALITAALG PHDHHHHVAN  180
QSASSSPEEM LMLPTPNTLY PNNGMLYPSQ DGHGNLYLPA IDHASSMPHG HGMLVYNVDR  240
HSHALPSLSS WPLEPHHPKL NHTDETIPLD ADKKTETTYN QTVDAQEHDA LPNLTAMLQD  300
NDPSSTFSCF SLNPQGSPNN TIGYINMDAL MRSASSSSVT YDNNLAINPS LHSEWLA*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.26e-41MYB family protein