PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.3193

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 348aa MW: 39489.6 Da PI: 6.2466

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.3193	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45	2e-14	168	214	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h +ErrRR+++N++f Lr+l+P +K++Ka+iL ++eY+k+L+ evm.model.AsparagusV1_03.3193 168 NHVLAERRRREKLNERFIILRSLVPFV-----TKVDKASILGDTIEYVKQLK 214 7999********************8.....8***************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 348 aa Download sequence
MELIQLAKSF FTYQHDHRPR PALSEHSASN SMAQNSDQHM FHLQPTPPIP QPETLDPHEL 60 NHENENDGDT DGDSVYEDDD VEVGIDTESQ NEMSEGLQLG SLDDCSNSLD AEIQILMAGT 120 SQWLLKNILF RVPNLHFKDK IGNSPRVEVG EGGNRFRKGT PQEELSANHV LAERRRREKL 180 NERFIILRSL VPFVTKVDKA SILGDTIEYV KQLKRRIQEL ESRNKITESD QKCKARVHNT 240 RKLRVVEHRK LTESKSSTIT VEALSSSVQV SIIDNNALIE LQCPYRERLL MHIMQTLDQL 300 KLEITSIKSS SVNGMLSAQL QAKVKDIDKK KASLVEVEKA IYQVFSQ*

Sequence ? help Back to Top

Protein Sequence Length: 348 aa Download sequence

MELIQLAKSF FTYQHDHRPR PALSEHSASN SMAQNSDQHM FHLQPTPPIP QPETLDPHEL  60
NHENENDGDT DGDSVYEDDD VEVGIDTESQ NEMSEGLQLG SLDDCSNSLD AEIQILMAGT  120
SQWLLKNILF RVPNLHFKDK IGNSPRVEVG EGGNRFRKGT PQEELSANHV LAERRRREKL  180
NERFIILRSL VPFVTKVDKA SILGDTIEYV KQLKRRIQEL ESRNKITESD QKCKARVHNT  240
RKLRVVEHRK LTESKSSTIT VEALSSSVQV SIIDNNALIE LQCPYRERLL MHIMQTLDQL  300
KLEITSIKSS SVNGMLSAQL QAKVKDIDKK KASLVEVEKA IYQVFSQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	178	ERRRRE
2	174	179	RRRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G09820.1	5e-47	bHLH family protein