PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.3069
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family E2F/DP
Protein Properties Length: 379aa    MW: 42418.9 Da    PI: 9.0073
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.3069genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP75.84.5e-242186171
                        E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71
                                   rk+ksL+ll+++f++l+e +e + v+l+++a++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  evm.model.AsparagusV1_03.3069 21 RKQKSLGLLCSNFVSLYEGKEVESVCLDDAARRL---GV--ERRRIYDIVNVLESVGILARKAKNKYSWIG 86
                                   79*****************999************...**..****************************98 PP
2E2F_TDP672.5e-21153237171
                        E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvse.........dvknkrRRiYDilNVLealnliek.....kekne 66 
                                    r+eksL++lt++f+k++  s+ ++v l+e+ak L+ +         +   k+RR+YDi+NVL++lnliek     ++k++
  evm.model.AsparagusV1_03.3069 153 RREKSLGVLTENFVKMFLISDVDTVLLDEAAKLLLGDvhnpsqpksNSAAKVRRLYDIANVLSSLNLIEKthhieTRKPA 232
                                    689*******************************************7778************************99**** PP

                        E2F_TDP  67 irwkg 71 
                                    +rw g
  evm.model.AsparagusV1_03.3069 233 FRWLG 237
                                    ***87 PP
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    
MSSSSSTFFE CEAPSHHSYS RKQKSLGLLC SNFVSLYEGK EVESVCLDDA ARRLGVERRR  60
IYDIVNVLES VGILARKAKN KYSWIGFSGI PMALEMLKEE ALISGCSGYA IEARSSKIED  120
LEDDGDDKSL DQNGDNGVEK PNSSKGKSVN DNRREKSLGV LTENFVKMFL ISDVDTVLLD  180
EAAKLLLGDV HNPSQPKSNS AAKVRRLYDI ANVLSSLNLI EKTHHIETRK PAFRWLGLKR  240
KPSAVTVSLQ PSSMASCKRA FGADITNVEL TKRSKSISLA EKKPVRVYSD GMKEYNVSAQ  300
KQFQTSKGYV FGPFSPSAMS KRDEQNEEKQ SKNVQNWETM ASSFRPTYQN PVLSEMFAHY  360
LESWNRWYAE IAQVTYRG*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.21e-103E2F/DP family protein