PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2984

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

Trihelix

Protein Properties

Length: 379aa MW: 43011.7 Da PI: 4.3462

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2984	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.1	9.9e-13	103	187	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 W+++ + +L++a + + + ++l+ W ev+kk+ ++ ++rs qC+++++ l+k+ykk+k+++ + ++ +s + evm.model.AsparagusV1_03.2984 103 WSEDSTFVLLDAWGDPFVKNGGKSLRCDEWIEVAKKVnQDSRITRSDSQCRNRLDTLKKKYKKEKARMAEI-PNFKSDWI 181 *******************9***********778889**********************97.88889* PP trihelix 81 yfdqle 86 yf++++ evm.model.AsparagusV1_03.2984 182 YFKKMD 187 *****8 PP

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence
MDDVEDDARY AHNRHHPTHP QFPRNFTDQE DDDDYESNSD GIKSDNEGEG ANGVDDDDDD 60 SSMESRGKRR KLDNFEFVPR KPPPLSVVAN LKSSGVKNSP PDWSEDSTFV LLDAWGDPFV 120 KNGGKSLRCD EWIEVAKKVN QDSRITRSDS QCRNRLDTLK KKYKKEKARM AEIPNFKSDW 180 IYFKKMDSLM SSPSPAPAQV TRSSPLRLTC GVDAGEYVFS NSRVYLNRAN AMDEMRDSPG 240 DTGTDDEEGG DDDDGNESDG LPPTMSEKKR RGGSGSFPSS AFKMLADSIQ KFSEVYEKIE 300 SNKRQQMVEL ERMRKEFHRD LEVQKRQILE RAQVEIERIR QEEGEEEEEE EEEEERMVGA 360 GDGDEDEEMN GSAENLSS*

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence

MDDVEDDARY AHNRHHPTHP QFPRNFTDQE DDDDYESNSD GIKSDNEGEG ANGVDDDDDD  60
SSMESRGKRR KLDNFEFVPR KPPPLSVVAN LKSSGVKNSP PDWSEDSTFV LLDAWGDPFV  120
KNGGKSLRCD EWIEVAKKVN QDSRITRSDS QCRNRLDTLK KKYKKEKARM AEIPNFKSDW  180
IYFKKMDSLM SSPSPAPAQV TRSSPLRLTC GVDAGEYVFS NSRVYLNRAN AMDEMRDSPG  240
DTGTDDEEGG DDDDGNESDG LPPTMSEKKR RGGSGSFPSS AFKMLADSIQ KFSEVYEKIE  300
SNKRQQMVEL ERMRKEFHRD LEVQKRQILE RAQVEIERIR QEEGEEEEEE EEEEERMVGA  360
GDGDEDEEMN GSAENLSS*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24490.1	2e-46	Trihelix family protein