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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | evm.model.AsparagusV1_03.2711 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 207aa MW: 23627 Da PI: 7.9345 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.7 | 4.7e-19 | 49 | 102 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k++++++eq+ Le F k++++ ++ +LA++lgL+ +qV vWFqNrRa++k
evm.model.AsparagusV1_03.2711 49 KKRKLSDEQVSFLEMSFGKEKKLESGRKMHLATELGLDPKQVAVWFQNRRARWK 102
67799************************************************9 PP
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| 2 | HD-ZIP_I/II | 120.9 | 6.6e-39 | 49 | 138 | 2 | 91 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLe 81
kkr+ls+eqv++LE+sF +e+kLe+ rK++la+eLgl+p+qvavWFqnrRAR+k+k+lE++y +Lk+++da++ ++++Le
evm.model.AsparagusV1_03.2711 49 KKRKLSDEQVSFLEMSFGKEKKLESGRKMHLATELGLDPKQVAVWFQNRRARWKSKRLEEEYVKLKSEHDAVVVQKCHLE 128
9******************************************************************************* PP
HD-ZIP_I/II 82 keveeLreel 91
+ev +L+e+l
evm.model.AsparagusV1_03.2711 129 NEVLSLKEKL 138
*******998 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 207 aa Download sequence |
MASSMKQVEE KMLFSLDLYP QIPQGDQKRT RRRRRRPKAD ELAGTAESKK RKLSDEQVSF 60 LEMSFGKEKK LESGRKMHLA TELGLDPKQV AVWFQNRRAR WKSKRLEEEY VKLKSEHDAV 120 VVQKCHLENE VLSLKEKLLD AEEKIKKLSE GGCSVGDGGG SPSSSSTETY QPPPPAALGE 180 FCGVEDEFMY INEYNCIIMD YGYFFM* |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 28 | 36 | KRTRRRRRR |
| 2 | 31 | 36 | RRRRRR |
| 3 | 31 | 52 | RRRRRRPKADELAGTAESKKRK |
| 4 | 32 | 53 | RRRRRRPKADELAGTAESKKRK |
| 5 | 33 | 54 | RRRRRRPKADELAGTAESKKRK |
| 6 | 34 | 55 | RRRRRRPKADELAGTAESKKRK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36740.1 | 2e-47 | HD-ZIP family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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