PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.237
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 304aa    MW: 33316.6 Da    PI: 6.5034
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.237genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.25.2e-201461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g+WT+eEd++lvd+++++G g+W++ ++  g++R++k+c++rw +yl
  evm.model.AsparagusV1_03.237 14 KGPWTPEEDQKLVDYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 61
                                  79********************************************97 PP
2Myb_DNA-binding55.41.4e-1767112148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++++eE++ +++++  lG++ W++Ia +++ gRt++++k++w+++l
  evm.model.AsparagusV1_03.237  67 RGKFSAEEEQTILNLHSILGNK-WSAIATHLP-GRTDNEIKNFWNTHL 112
                                   89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    
MGRSPCCDEN GLKKGPWTPE EDQKLVDYIQ KHGHGSWRAL PKLAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SAEEEQTILN LHSILGNKWS AIATHLPGRT DNEIKNFWNT HLKKKLIQMG  120
FDPMTHRPRT DFFAALPGLL ALANLRDLVD RRPWDDHSLS LHAAEAVQTA KLQYLQYLLQ  180
SAASVAQAST NPNNNQNLDA MGLFNQSPVP CSEQGFVQGV DGLMPLSNDT NQGSSSFTLL  240
SQGDNSTTPS ITPLMEGLPP LADLSVGNMA GDACSTSSCG GSTGMSSFWP ELLLDDPFMT  300
EFV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.16e-92MYB family protein