PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.2139

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

HB-PHD

Protein Properties

Length: 810aa MW: 89491.9 Da PI: 5.0838

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.2139	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	44.9	2e-14	637	681	11	55
HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 ++ L e+F++n+yp+++++e L+++lgLt rqV WF N R evm.model.AsparagusV1_03.2139 637 ATQKLYECFQENQYPTRQKKESLSEELGLTYRQVDKWFTNSRHSF 681 5799*************************************9765 PP
2	PHD	39.2	1.6e-13	234	289	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C + +++++lCdg C++ fH+kCl+++l se++p g wlC+ C++k evm.model.AsparagusV1_03.2139 234 FCAKCASkdVSLDNDIILCDGiCDRGFHQKCLNPPLLSEDIPLGdeGWLCPACDCK 289 699999964444******88****************9999*****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 810 aa Download sequence
MASPISSSSE IRSISRQSPR LQVHEPRSGI TENGCTKSRF AGPENVSILA EQDETDLSKL 60 GKVDVNNDVV KSPNKSPRKR KKVSSQLNGK RYPLRSSLGT GRVLRSMSNT TNNTQPGQGN 120 APVNTVKKGR KKRKGVKGAS NDEFSVIRRR VRYLLTRMNY EQNLIDAYAG EGWKGQSAEK 180 LKPEKELERA KSEILRCKFK IRELFRHLVS LSSEGKFEES LFDSEGQIDS EDIFCAKCAS 240 KDVSLDNDII LCDGICDRGF HQKCLNPPLL SEDIPLGDEG WLCPACDCKV DCIELLNEFQ 300 GSNISIKDTW EKVFPEAVAI TNGDKQHDDM PSDDSEDYDY DPDGLEADVN DHKGESGPGE 360 SESEESESGE SESEGSDFSA ASEDSDAPNS NKKNENFGLP SSDDSEDDDF DPDAPDASKN 420 ISKDSSSDES DFTSDSDEFC NELSKNLGIN EDSATSLSNL KPLAQSGEGT YSGNMDSSEL 480 LSPSEPVLGQ ENEVPSGKRQ LERLDYKKLY DEAYGKSSDS SSDEEWSDSS NMNTSNNRTK 540 YASRKESDGL LKMNMRTSKN CKKSNNVAGM SAEAVAIKKS GVETPQVSQG HETTPRKTHQ 600 ALDTLEHEVA EQKHGRHSDS NANKSSASSN RRLGEVATQK LYECFQENQY PTRQKKESLS 660 EELGLTYRQV DKWFTNSRHS FRVSSKDAPP NGEASLPDKD STAISRNISD ITKTDESTGQ 720 TSTSEGVKRK KSEEAKQIKV GAEHVNEGNT TFIGQSSRSK GFKRKNSEEA KQIKVGAERG 780 KEHEGNMSEA DKDRQKAIAR ELRKMKQKR*

Sequence ? help Back to Top

Protein Sequence Length: 810 aa Download sequence

MASPISSSSE IRSISRQSPR LQVHEPRSGI TENGCTKSRF AGPENVSILA EQDETDLSKL  60
GKVDVNNDVV KSPNKSPRKR KKVSSQLNGK RYPLRSSLGT GRVLRSMSNT TNNTQPGQGN  120
APVNTVKKGR KKRKGVKGAS NDEFSVIRRR VRYLLTRMNY EQNLIDAYAG EGWKGQSAEK  180
LKPEKELERA KSEILRCKFK IRELFRHLVS LSSEGKFEES LFDSEGQIDS EDIFCAKCAS  240
KDVSLDNDII LCDGICDRGF HQKCLNPPLL SEDIPLGDEG WLCPACDCKV DCIELLNEFQ  300
GSNISIKDTW EKVFPEAVAI TNGDKQHDDM PSDDSEDYDY DPDGLEADVN DHKGESGPGE  360
SESEESESGE SESEGSDFSA ASEDSDAPNS NKKNENFGLP SSDDSEDDDF DPDAPDASKN  420
ISKDSSSDES DFTSDSDEFC NELSKNLGIN EDSATSLSNL KPLAQSGEGT YSGNMDSSEL  480
LSPSEPVLGQ ENEVPSGKRQ LERLDYKKLY DEAYGKSSDS SSDEEWSDSS NMNTSNNRTK  540
YASRKESDGL LKMNMRTSKN CKKSNNVAGM SAEAVAIKKS GVETPQVSQG HETTPRKTHQ  600
ALDTLEHEVA EQKHGRHSDS NANKSSASSN RRLGEVATQK LYECFQENQY PTRQKKESLS  660
EELGLTYRQV DKWFTNSRHS FRVSSKDAPP NGEASLPDKD STAISRNISD ITKTDESTGQ  720
TSTSEGVKRK KSEEAKQIKV GAEHVNEGNT TFIGQSSRSK GFKRKNSEEA KQIKVGAERG  780
KEHEGNMSEA DKDRQKAIAR ELRKMKQKR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	KSPRKRK
2	78	82	RKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	2e-83	HB-PHD family protein