PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.2014 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | TCP | ||||||||
Protein Properties | Length: 227aa MW: 25686.8 Da PI: 10.3267 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 100.5 | 3e-31 | 44 | 187 | 3 | 110 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa............ 70 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WL+++a+++i +l+ ++++++ evm.model.AsparagusV1_03.2014 44 GGKDRHSKVSTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLINKAQHEINKLPPLKFPPQglnqgdgdhskg 123 79*************************************************************77777443333333222 PP TCP 71 seceaesssssasnsssg....................................kaaksaa.kskksqksaasalnl 110 ++ + ++a + +s ++++sa+ + ++ evm.model.AsparagusV1_03.2014 124 NDI-------------VNaqvlshevhqrdnssyyqleainaylsqhgirssqsNEAHAMVfPSMFQSHSANPMMDF 187 111.............1122222222222233455666665555555554443322222222444444444444444 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MIRNQSNKDL STKQEGNHKA PPTSSRILSA LRNPRIVRVS REFGGKDRHS KVSTVRGLRD 60 RRVRLSVPTA IQLYDLQDRL GLNQPSKVVD WLINKAQHEI NKLPPLKFPP QGLNQGDGDH 120 SKGNDIVNAQ VLSHEVHQRD NSSYYQLEAI NAYLSQHGIR SSQSNEAHAM VFPSMFQSHS 180 ANPMMDFNAK EYFNEFEMAR SVSQMPQSNM EINSVHLNSS QPRSFQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 3e-45 | TCP family protein |