PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.20 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 266aa MW: 29924.4 Da PI: 9.7422 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.1e-16 | 6 | 51 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+++G+ +W++Ia+++ gR++k+c++rw++ evm.model.AsparagusV1_03.20 6 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 51 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 53.7 | 4.7e-17 | 58 | 101 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++++eE+++l a++++G++ W+ Ia+ ++ gRt++ +k++w+ evm.model.AsparagusV1_03.20 58 RRAFSEEEEQKLMAAHRLYGNK-WAMIAKLFP-GRTDNAVKNHWHV 101 678*******************.*********.***********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 266 aa Download sequence |
SKLCARGHWR PAEDSKLREL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA 60 FSEEEEQKLM AAHRLYGNKW AMIAKLFPGR TDNAVKNHWH VIMARKYREQ SSGYRRRKLP 120 QSHHLQRIRR TSSLVLASHR EAEDQEAAAA ADHEVEDHGT SRYCFSYSAA LDLGSNHLMT 180 GEGRDNPQIS SSHHQDGYLA CAQQSPFDFL SLSAPGPTTR ARGKTRISSP PSKGVFNVDG 240 QRSSCYPNDN TSCSCSSPVR DAAVF* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 2e-75 | MYB family protein |