PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.20
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 266aa    MW: 29924.4 Da    PI: 9.7422
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.20genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-16651147
                                 TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
              Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                 rg W + Ed +l ++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  evm.model.AsparagusV1_03.20  6 RGHWRPAEDSKLRELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 51
                                 899*****************************.***********996 PP

2Myb_DNA-binding53.74.7e-1758101146
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
              Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                  r ++++eE+++l  a++++G++ W+ Ia+ ++ gRt++ +k++w+ 
  evm.model.AsparagusV1_03.20  58 RRAFSEEEEQKLMAAHRLYGNK-WAMIAKLFP-GRTDNAVKNHWHV 101
                                  678*******************.*********.***********96 PP

Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
SKLCARGHWR PAEDSKLREL VALYGPQNWN LIAEKLEGRS GKSCRLRWFN QLDPRINRRA  60
FSEEEEQKLM AAHRLYGNKW AMIAKLFPGR TDNAVKNHWH VIMARKYREQ SSGYRRRKLP  120
QSHHLQRIRR TSSLVLASHR EAEDQEAAAA ADHEVEDHGT SRYCFSYSAA LDLGSNHLMT  180
GEGRDNPQIS SSHHQDGYLA CAQQSPFDFL SLSAPGPTTR ARGKTRISSP PSKGVFNVDG  240
QRSSCYPNDN TSCSCSSPVR DAAVF*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.12e-75MYB family protein