PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | bHLH | ||||||||
Protein Properties | Length: 328aa MW: 35914.3 Da PI: 5.4392 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.8 | 1.3e-05 | 276 | 314 | 13 | 54 |
HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R++i + + Lr++lP+ ++k + +++L +A++Y+ksL evm.model.AsparagusV1_03.1905 276 REKIHETIGVLRRILPEG---KGKGKDAVSVLDEAIRYLKSL 314 999**************8...5666889************99 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence |
MVCQAATQTR FRALKHEYGI AGNATIIVRV IACFQPLQDC QAEYFRHLLK PVTVYLGIND 60 SGAVLMEKDC DHLQLRSFNC ATNVGAPALA KQSTNPVVFP TYADPYGFFH LNPALMPPSN 120 PTGFASGQKR FMVFDRSGDR TNLIYTSFGS QFPYPYQTNA GVKQQLPASN ETNVSNGDVK 180 EEMHEDTDEI DALLYSDSDN EQEEEEESTG HSPFDATGIN FDDREGEVAS SAVLQPPPPP 240 AKRRRASSEL DSSLADTASS TNCFSNDIEC IKKVKREKIH ETIGVLRRIL PEGKGKGKDA 300 VSVLDEAIRY LKSLRLKAKG LGSSPAI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 242 | 275 | KRRRASSELDSSLADTASSTNCFSNDIECIKKVK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29950.1 | 7e-06 | bHLH family protein |