PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1873

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 300aa MW: 33808.2 Da PI: 7.5417

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1873	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.2	6.9e-14	126	177	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + ++++ + a+i+ A++++k+L+ evm.model.AsparagusV1_03.1873 126 QRMTHIAVERNRRKQMNEYLAVLRSLMPAS---YAQRGDQASIVGGAINFVKELE 177 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MTLEAAIFQQ DPFAYPSKEL YNTISEWNFC EFGSLGNIVE EEMKGVVLKN EMNGTGGGGD 60 YVNFNHCSAN SSASPEWHWS ANSSASPVTG EAFAGREDKA VEERPTTRRK RRRTKSYKNK 120 EEVESQRMTH IAVERNRRKQ MNEYLAVLRS LMPASYAQRG DQASIVGGAI NFVKELEQRL 180 QTLESKKHKQ SSPFSRFFTF PQYSTCNNTN GGVAADIEAT MIESHVNLKV QLRRQPKQLL 240 RMVMGLQSFW LTILHLNVTT ALDQMVMYSF SLKVEDDCQL TSVDEIAAAV YQMIGGMQN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	109	113	RKRRR
2	109	114	RKRRRT
3	127	138	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	1e-73	bHLH family protein