PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_03.1712
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family HD-ZIP
Protein Properties Length: 309aa    MW: 35645.1 Da    PI: 6.7904
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_03.1712genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.8e-18110163356
                                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                    k+++++ eq+++Le+ Fe  +++  e++++LA+ lgL+ rqV +WFqNrRa++k
  evm.model.AsparagusV1_03.1712 110 KKRRLNIEQVRTLEKNFEIANKLEPERKTQLATALGLQPRQVAIWFQNRRARWK 163
                                    4557899**********************************************9 PP
2HD-ZIP_I/II129.21.7e-41109199191
                    HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerL 80 
                                    ekkrrl+ eqv++LE++Fe  +kLeperK++la++Lglqprqva+WFqnrRAR+ktkqlE+dy++Lkr++da+++ene+L
  evm.model.AsparagusV1_03.1712 109 EKKRRLNIEQVRTLEKNFEIANKLEPERKTQLATALGLQPRQVAIWFQNRRARWKTKQLERDYDVLKRQFDAIRSENEAL 188
                                    69****************************************************************************** PP

                    HD-ZIP_I/II  81 ekeveeLreel 91 
                                    ++++++L++e+
  evm.model.AsparagusV1_03.1712 189 QTHNKKLQAEI 199
                                    ********987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    
MPHQPFSLSL SLSFSYPFQH TASLSPMLNL DQMGCNSSPF FSPNFLLQIQ TPHDQLHQDL  60
PSLPQEFRGS IHNKLELHKM LGKRSMSFSA INHNCEEDEL SDDCSLTGEK KRRLNIEQVR  120
TLEKNFEIAN KLEPERKTQL ATALGLQPRQ VAIWFQNRRA RWKTKQLERD YDVLKRQFDA  180
IRSENEALQT HNKKLQAEIL ALKGRETSEM MINLNKETEG SCSNRSENSS EHNLDVSRTP  240
QPHIETSPIN PRQSIPFFPS IRPSSMIQLF HCPKTEQNTV SDENFSNLLC GIDDQSGFWQ  300
WPDQQNFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158166RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-86HD-ZIP family protein