PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 261aa MW: 29230.7 Da PI: 7.8755 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.1 | 7.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+ +W++++ g+ R+ k+c++rw +yl evm.model.AsparagusV1_03.1693 14 KGPWTPEEDIILVSYIQEHGPANWRSVPTNTGLLRCSKSCRLRWTNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 48.9 | 1.5e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ +E++l++++ ++lG++ W+tIa++++ Rt++++k++w+++l evm.model.AsparagusV1_03.1693 67 RGNFSVQEEKLIIHLQALLGNR-WATIASYLP-ERTDNDIKNFWNTHL 112 89********************.*********.************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence |
MGRPPCCEKF GVKKGPWTPE EDIILVSYIQ EHGPANWRSV PTNTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF SVQEEKLIIH LQALLGNRWA TIASYLPERT DNDIKNFWNT HLKKKLQKVN 120 NNNNTISNNI HQPIPKGQWE RRLQTDINLA KQALNEALRI NNPTDTITSP TSTSPSSSSS 180 SYPTYASSTE NISRLLEGWM SSRKPTNSLE VSETESKDTS SGGQEPLSLI ETWFFDDGLG 240 GENNEGLFDL SVDNVACGMF * |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62470.2 | 1e-92 | MYB family protein |