PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1425

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

TCP

Protein Properties

Length: 310aa MW: 34704.9 Da PI: 6.8922

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1425	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.6	5.3e-35	89	222	2	130
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssss 81 +++kdrhski T++g+RdRR+Rl +e+a +fF +qd+LG+dk+skt++WL+++ak +ik+l +++++ ++e+s s+ evm.model.AsparagusV1_03.1425 89 TTRKDRHSKIVTAQGPRDRRMRLNLEVASQFFNIQDMLGYDKASKTVNWLMKEAKDSIKKLKVIARPKEHSLSNEASTSE 168 789***********************************************************7777766655555555 PP TCP 82 asnsssg..kaaksaa.kskksqksaasalnlakesr......akarararertrekm 130 +++ ++ + + ++ ++q+++a +k r arararertr k+ evm.model.AsparagusV1_03.1425 169 LESEDISavS--DCKGnPPASPQENTA--PTAKKAGRrpsxxxXMARARARERTRVKK 222 5555555332..333212222222222..33333444466777999999**99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence
MWVLGYMIYT TTMFPYNPDP PYFAMESRPL SPFFPFSPEL NQDSTLHDLV FPQLGAEAQS 60 PLTPPTAPPI KEARSPHKKA NVAIGRKRTT RKDRHSKIVT AQGPRDRRMR LNLEVASQFF 120 NIQDMLGYDK ASKTVNWLMK EAKDSIKKLK VIARPKEHSL SNEASTSELE SEDISAVSDC 180 KGNPPASPQE NTAPTAKKAG RRPSXXXXMA RARARERTRV KKLGDGDQDW NELLSSSVHF 240 ETIEESGSHD VKSSLDLVAE VEEQCSHSTD QSTQLNNGDI SVSILEYSNS NLFPAEPWES 300 QLQNSLWQV*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-25	TCP family protein