PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1208

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

AP2

Protein Properties

Length: 534aa MW: 59716.6 Da PI: 6.9025

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1208	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.2	5.6e-15	265	324	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +++Aa+a++ a++k++g evm.model.AsparagusV1_03.1208 265 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEDKAARAYDLAALKYWG 324 78*****************655454478446******99***********98 PP
2	AP2	46	1.3e-14	369	418	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g evm.model.AsparagusV1_03.1208 369 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 418 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 534 aa Download sequence
MDRQMSTWLG FSLSSAPALS NQNQDETFSN HQSSNNNENS SNPPLTVMPL NSDGSICFLD 60 PNFRPHNHHV DADTSDWRYG GSNEETRGPK LEDFLGGYSD NTNEDNQIQS PRPLSPINEF 120 YYQNPNPTEI NVNIPPCFSP SEGRDPQDSN IHNPYHFLNS YQYPQLQMPN HNHNPIDSCQ 180 TSLSGLKSWL RQNPYPSAPD KPSHESNVQA LTLSMSPGLI AESSQILVAE PLQVAVDNRK 240 RPAAKAGNRD SGPRKSIETF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV 300 YLGGYDKEDK AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE FVAHLRRKSS 360 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN 420 AVTNFDISRY DVKRICSSSH LIAGDLAKRN SPKSTDSSEP KSLELPSSNS AGTPEDLTNM 480 AWDPSRAEPG SNGTDQASHG VSLEGKSTEC GEYMAQGYLF PKTLGPMFAL WNE*

Sequence ? help Back to Top

Protein Sequence Length: 534 aa Download sequence

MDRQMSTWLG FSLSSAPALS NQNQDETFSN HQSSNNNENS SNPPLTVMPL NSDGSICFLD  60
PNFRPHNHHV DADTSDWRYG GSNEETRGPK LEDFLGGYSD NTNEDNQIQS PRPLSPINEF  120
YYQNPNPTEI NVNIPPCFSP SEGRDPQDSN IHNPYHFLNS YQYPQLQMPN HNHNPIDSCQ  180
TSLSGLKSWL RQNPYPSAPD KPSHESNVQA LTLSMSPGLI AESSQILVAE PLQVAVDNRK  240
RPAAKAGNRD SGPRKSIETF GQRTSQYRGV TRHRWTGRYE AHLWDNSCRK EGQTRKGRQV  300
YLGGYDKEDK AARAYDLAAL KYWGPTTHIN FPLSTYEKEL EEMKNMTRQE FVAHLRRKSS  360
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN  420
AVTNFDISRY DVKRICSSSH LIAGDLAKRN SPKSTDSSEP KSLELPSSNS AGTPEDLTNM  480
AWDPSRAEPG SNGTDQASHG VSLEGKSTEC GEYMAQGYLF PKTLGPMFAL WNE*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72570.1	1e-131	AP2 family protein