PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_03.1180

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

MYB_related

Protein Properties

Length: 421aa MW: 46383.4 Da PI: 10.717

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_03.1180	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.5	1.9e-10	232	266	6	42
HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHH CS Myb_DNA-binding 6 teEdellvdavkqlGggtWktIartmgkgRtlkqcks 42 +eE+ l++++++qlG++ W++ r+++ gRt++++k+ evm.model.AsparagusV1_03.1180 232 AEEEMLILQLHAQLGNK-WARMGRELP-GRTDNEIKN 266 79*************.*****.*****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MAMASTLVLS FSKICLTFLT FNLILEIIRK LFLDKRRRKK LYQADEYITD LGVIEGRRRA 60 KWALHERGLK VWALLGLGIL VPSSIAEVLA TRLRSLFMGS VAGFYAGMPQ FAVCFASWLE 120 KLGLSFLVVP PVLFVSGLFV KKFRFWYGLV GGRGRSSTSD RNAATSAGTT RSQRRVRGPL 180 PRTRSLWATS TTRRGELRTR SEELRAGPLR QELQASVGQP PRGQSQEGIV HAEEEMLILQ 240 LHAQLGNKWA RMGRELPGRT DNEIKNLLEH EGQEAAEAGL PLYPNEIRQQ AAARTRPSPL 300 NLPSSTSPAA MPLLFCAGRS KNEGGVGFDA AGRRRTGNMF HEYGYDGSGG GSYNETPRSS 360 LMTPIIRRDG EDASSLHTNC LMPALAALRT GAGCWMRWLE ETGVSEGSAR REMVVALSQS 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MAMASTLVLS FSKICLTFLT FNLILEIIRK LFLDKRRRKK LYQADEYITD LGVIEGRRRA  60
KWALHERGLK VWALLGLGIL VPSSIAEVLA TRLRSLFMGS VAGFYAGMPQ FAVCFASWLE  120
KLGLSFLVVP PVLFVSGLFV KKFRFWYGLV GGRGRSSTSD RNAATSAGTT RSQRRVRGPL  180
PRTRSLWATS TTRRGELRTR SEELRAGPLR QELQASVGQP PRGQSQEGIV HAEEEMLILQ  240
LHAQLGNKWA RMGRELPGRT DNEIKNLLEH EGQEAAEAGL PLYPNEIRQQ AAARTRPSPL  300
NLPSSTSPAA MPLLFCAGRS KNEGGVGFDA AGRRRTGNMF HEYGYDGSGG GSYNETPRSS  360
LMTPIIRRDG EDASSLHTNC LMPALAALRT GAGCWMRWLE ETGVSEGSAR REMVVALSQS  420
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	34	41	DKRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32460.2	4e-17	MYB family protein