PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_03.1002 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 675aa MW: 75297.7 Da PI: 6.4396 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 53.5 | 4.2e-17 | 17 | 72 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ ++t++q + Lee+F+ n++p+++er ++ ++lgL+ ++Vk+WFqN+R++ k evm.model.AsparagusV1_03.1002 17 RKPYERHTRQQKRKLEEYFAVNQHPDERERMRIGRELGLDHSRVKFWFQNKRTQNK 72 789999***********************************************998 PP | |||||||
2 | START | 115.7 | 6.5e-37 | 210 | 417 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEE......EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS START 2 laeeaaqelvkkalaeepgWvkss......esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 +ae+aa+el+ +a+ ++p+W + e++n+ e+l ++++ v ++ ea ra+++v m++ +lve+l d k evm.model.AsparagusV1_03.1002 210 IAEAAADELLIMAQTGQPLWLPAAgpenyiEILNEGEYLLSVSKWAVpnsfgFTREATRAVTMVNMNAFRLVEILCDAK- 288 799********************999****************888889999****************************. PP CT-TT-SEEEEEEEECTTEEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EES CS START 71 qWdetlakaetlevissggalqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaell 148 +W+ + v+ +++ ++ae+q++splvp Rd +f+Ry+++ + +wv+vdvS+d ++ p R++++ evm.model.AsparagusV1_03.1002 289 KWSALFS-----GVVLRATTM-EISAEYQLPSPLVPtRDILFLRYCKKlPLERTWVVVDVSLDLFRSDPA---PNRCQKR 359 ******9.....555555554.489***********************655789*********9999884...78***** PP SEEEEEEEECTCEEEEEEEE-EE..--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS START 149 pSgiliepksnghskvtwvehvd..lkgrlphwllrslvksglaegaktwvatlqrqc 204 pSg++ie+ +++ kv+wvehv+ ++++ +h++++++v+sg+ +ga++w+a l+rq evm.model.AsparagusV1_03.1002 360 PSGCIIEEIEEQTIKVIWVEHVEinVQANFVHAMYKPIVSSGIGFGARRWLAMLGRQS 417 *********************9833578899***********************9986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 675 aa Download sequence |
MDSGSDSRSE EPPAQRRKPY ERHTRQQKRK LEEYFAVNQH PDERERMRIG RELGLDHSRV 60 KFWFQNKRTQ NKNKALKSEM EELRSKYESA MAQMEVMKES LRSAACSKCG GPLLGEETLN 120 ERQIRVGNAK LRDEINQGPT IEGNCIGVPF ACSSSFQQPI SIPGPSNFFI PNGANIENST 180 YNAAANGTTE STFNNTTEVL ENHANVFTQI AEAAADELLI MAQTGQPLWL PAAGPENYIE 240 ILNEGEYLLS VSKWAVPNSF GFTREATRAV TMVNMNAFRL VEILCDAKKW SALFSGVVLR 300 ATTMEISAEY QLPSPLVPTR DILFLRYCKK LPLERTWVVV DVSLDLFRSD PAPNRCQKRP 360 SGCIIEEIEE QTIKVIWVEH VEINVQANFV HAMYKPIVSS GIGFGARRWL AMLGRQSDRI 420 ANAMNCNIPY FSEFDAERAT RGTSPGNNVL KLAERMVLSF YAGLACSLAH GWVNEFGDGT 480 ESVKIASKRN VGDPRMPSGV IVNASVSFWV PAMPKRVFDF LCDESSRDKW DSPSEREKLV 540 PVVLIPTGIE SGNYISILKQ ANDKTKHKKK MFIQESCFDN TCSYLIYAPV SKRSVNVCIH 600 GGDQERIQLL PSGVTIVPDG PYWMTNGSLV TVSIQILSDS NPQTDVNPGS VELVNNLVMS 660 VVDSIKIGVV DENQ* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04890.1 | 1e-167 | HD-ZIP family protein |