PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_02.959 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27833.4 Da PI: 4.962 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46 | 1.2e-14 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd++l+d + G +W+++++ g+ R++k+c++rw +yl evm.model.AsparagusV1_02.959 14 RGPWTMEEDQKLIDFILNNGIQCWRLVPKLAGLMRCGKSCRLRWINYL 61 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 58.4 | 1.6e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg ++++E+++l++++ +lG++ W++Ia++++ gRt++++k++w++ evm.model.AsparagusV1_02.959 67 RGDFSEDEEDILIELHSRLGNR-WSKIASHFP-GRTDNEIKNHWNT 110 899*******************.*********.***********97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MGRKPCCDKV GLKRGPWTME EDQKLIDFIL NNGIQCWRLV PKLAGLMRCG KSCRLRWINY 60 LRPDLKRGDF SEDEEDILIE LHSRLGNRWS KIASHFPGRT DNEIKNHWNT RIKKKLKLQG 120 IDPITHEPIK QSEDGHDSVS NITVDDENKV LDANANATSQ DKNKIVPPSQ EKEENNNEAI 180 LNADGRLHET INLTMDGECS VEGSSLCWDA IDSFPSWEAM YYLEDVLFFM NDPLVSIDSF 240 GKD* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14340.1 | 2e-78 | MYB family protein |