PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

evm.model.AsparagusV1_02.896

Organism

Asparagus officinalis

Taxonomic ID

4686

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus

Family

bHLH

Protein Properties

Length: 372aa MW: 42138.7 Da PI: 4.8552

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
evm.model.AsparagusV1_02.896	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	162	213	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ + Lr+l+P + + ++ + a+i A+e++++L+ evm.model.AsparagusV1_02.896 162 QRMTHIAVERNRRRQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 213 79**************************...9***************9995 PP

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence
MDKELQESYS DFVHQAQAPE SSVEMVDYML SNHPPPPQHQ ISLDRLSFAD IMQFADFGPK 60 LGLNQSKNLS EDDNYLLRSF NLMNEKQTHG EEGPSMINSL PPPQPQMLLQ DEEEEEEGRR 120 LSEMQEQLGF SGGQKIGGNN LEVKNKRKRA RAMKTSEEVE SQRMTHIAVE RNRRRQMNEH 180 LRVLRSLMPG SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE SQKRRRFFGG NEPPRNPAEA 240 PPLLPPPSQP FFPPLALPCS DNDTMRILDL DPNLQEDMAE NKSVLANIEV RVLGFDALIK 300 ILSRRRPQQL IKTIAALEDM QFSILHTNIT TIEQTVLYSF NVKITGETSC SAEDIVNSVH 360 QILSFIDTST I*

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence

MDKELQESYS DFVHQAQAPE SSVEMVDYML SNHPPPPQHQ ISLDRLSFAD IMQFADFGPK  60
LGLNQSKNLS EDDNYLLRSF NLMNEKQTHG EEGPSMINSL PPPQPQMLLQ DEEEEEEGRR  120
LSEMQEQLGF SGGQKIGGNN LEVKNKRKRA RAMKTSEEVE SQRMTHIAVE RNRRRQMNEH  180
LRVLRSLMPG SYVQRGDQAS IIGGAIEFVR ELEQLLQCLE SQKRRRFFGG NEPPRNPAEA  240
PPLLPPPSQP FFPPLALPCS DNDTMRILDL DPNLQEDMAE NKSVLANIEV RVLGFDALIK  300
ILSRRRPQQL IKTIAALEDM QFSILHTNIT TIEQTVLYSF NVKITGETSC SAEDIVNSVH  360
QILSFIDTST I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	163	174	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24140.1	2e-95	bHLH family protein