PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.636
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 246aa    MW: 28568.8 Da    PI: 9.9896
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.636genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.94.7e-181560147
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                                  rg W + Ede+l ++v+q+G+ +W++Ia++++ gR++k+c++rw++ 
  evm.model.AsparagusV1_02.636 15 RGHWRPGEDEKLRQLVEQYGPQNWNSIAEKLQ-GRSGKSCRLRWFNQ 60
                                  899*****************************.***********996 PP
2Myb_DNA-binding58.21.9e-1867110146
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                   r+++T+eE+++l+ a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  evm.model.AsparagusV1_02.636  67 RKPFTEEEEDRLLAAHRVHGNK-WAHIARLFP-GRTDNAVKNHWHV 110
                                   789*******************.*********.***********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    
MEASGSEDQT KSCPRGHWRP GEDEKLRQLV EQYGPQNWNS IAEKLQGRSG KSCRLRWFNQ  60
LDPRINRKPF TEEEEDRLLA AHRVHGNKWA HIARLFPGRT DNAVKNHWHV IMARRQRERS  120
RQLGKSSRSS SIYDPTSVHQ ERNHISNHRM FEFRNPLKGF APSSSSQFSW GFPSSSQFSD  180
RLPYYHRYRG LGSASPFSIG FSFVDDECKF VKIGDNSNEV MMKHEDNESL KKDVPFIDFL  240
GVENR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.12e-65MYB family protein