PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.591
Organism
Asparagus officinalis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family ARF
Protein Properties Length: 700aa    MW: 77903.1 Da    PI: 5.9654
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.591genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.51.1e-22126226198
                                   EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                            B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                   f+k+lt sd++++g +++ +++a+e+       ++++   ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv++++L
  evm.model.AsparagusV1_02.591 126 FCKTLTASDTSTHGGFSVLRRHADEClpqldmsQHPP--WQELIATDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSSKRL 204
                                   99****************************9654444..458*************************************** PP

                                   -TT-EEEEEE-SSSEE..EEEEE- CS
                            B3  75 kegDfvvFkldgrsefelvvkvfr 98 
                                    +gD ++F   + +++el+v+v+r
  evm.model.AsparagusV1_02.591 205 VAGDAFIFL--RGENGELRVGVRR 226
                                   *********..449999*****97 PP
2Auxin_resp105.94.6e-35252334183
                    Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrs 81 
                                   a+ha+st++ F+v+Y+Pr+s+seF+++v+++++a ++++svGmRfkm+fe+++++err+sGt+v v d   +rW++S+Wrs
  evm.model.AsparagusV1_02.591 252 ASHAISTGTLFSVFYKPRTSRSEFIISVNRYLEAKSQRLSVGMRFKMRFEGDEAPERRFSGTIVEVDDPGLSRWTDSEWRS 332
                                   789****************************************************************************** PP

                    Auxin_resp  82 Lk 83 
                                   Lk
  evm.model.AsparagusV1_02.591 333 LK 334
                                   96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    
MALAGSNHQS GARLGASVDL LYKELWHACA GPLVTVPREG ERVYYFPQGH MEQLEASTHQ  60
GLDQQMPLFN LPSKILCRVM HVQLRAEADS DEVYAQITLL PEPDQGEITS PDPLLPEPEK  120
CTIHSFCKTL TASDTSTHGG FSVLRRHADE CLPQLDMSQH PPWQELIATD LHGNEWHFRH  180
IFRGQPRRHL LTTGWSVFVS SKRLVAGDAF IFLRGENGEL RVGVRRLMRQ LNNMPSSVIS  240
SHSMHLGVLA TASHAISTGT LFSVFYKPRT SRSEFIISVN RYLEAKSQRL SVGMRFKMRF  300
EGDEAPERRF SGTIVEVDDP GLSRWTDSEW RSLKVQWDEP SSIVRPDKVS PWEVEPLVAS  360
PPPASQPVQR NKRARPPISP SSAPDLPSHF GMWKPQTDTT KTFSFSRLQR NSESYPFSTP  420
SPLFSPTSKP SSVGFNGNTT PSLIPTSPGS AGFNGSSGPL SMYWPSRADS QTESFSASIT  480
KEPTRKKQES NSGNSCRLFG ILLESSTTAE ESSPVATTSV VAEDQPLASQ DFDSEQQSHP  540
SNANHSDVPA VSSEPEKSCL RSPQETQSRQ LRSCTKVHMH GMAVGRAVDL TRFDGYEDLL  600
HKLEEMFSIE GELTSAVKKW QVVYTDDEDD MMLVGDDPWN EFCNIVRKIY ICTCEEAKQL  660
SPKSKLPIFK GEGISDNSDA DATRNDYDDQ PKDLQDKDS*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0ARF family protein