PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm.model.AsparagusV1_02.2272 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
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Family | MYB | ||||||||
Protein Properties | Length: 394aa MW: 43839.8 Da PI: 6.791 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.8 | 4.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+l + ++++G g+W+++++ g+ R++k+c++rw +yl evm.model.AsparagusV1_02.2272 14 KGLWSPEEDEKLFNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 43.9 | 5.5e-14 | 67 | 109 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ evm.model.AsparagusV1_02.2272 67 RGTFSEQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109 899*******************.*********.*********998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence |
MGRHSCCYKQ KLRKGLWSPE EDEKLFNHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SEQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG 120 IDPVTHKPLS ETEARESKLL ADSSDTASVS EPTPPLMPIE SPRSKNSVTP TKELFLDRYT 180 AAANNGGADS LGYLPLPQLT YSPEYGLGPP TNQNPSLWFS QNSRLVGMNQ ELNSTALPST 240 GPSTSTSKLP AHLPSDGSPA GFHYWEAGKS SNNSTSSGNS GSGIELQSDT SLFDGGIFQW 300 MDLCSYKEAQ FHLQGEPEDL KWSEFLNSSI QAPATVQNQS QAIMYGEIKE ESQFTVDDGL 360 STWHNYQRRQ HQLQDSDVHG KDIHKLTAAF EQV* |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 4e-88 | MYB family protein |