PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm.model.AsparagusV1_02.2272
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Asparagaceae; Asparagoideae; Asparagus
Family MYB
Protein Properties Length: 394aa    MW: 43839.8 Da    PI: 6.791
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm.model.AsparagusV1_02.2272genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.5e-171461148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                   +g W++eEde+l + ++++G g+W+++++  g+ R++k+c++rw +yl
  evm.model.AsparagusV1_02.2272 14 KGLWSPEEDEKLFNHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
                                   678*******************************************97 PP

2Myb_DNA-binding43.95.5e-1467109145
                                    TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
                Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                    rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
  evm.model.AsparagusV1_02.2272  67 RGTFSEQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 109
                                    899*******************.*********.*********998 PP

Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MGRHSCCYKQ KLRKGLWSPE EDEKLFNHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY  60
LRPDLKRGTF SEQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS SIKKKLRQRG  120
IDPVTHKPLS ETEARESKLL ADSSDTASVS EPTPPLMPIE SPRSKNSVTP TKELFLDRYT  180
AAANNGGADS LGYLPLPQLT YSPEYGLGPP TNQNPSLWFS QNSRLVGMNQ ELNSTALPST  240
GPSTSTSKLP AHLPSDGSPA GFHYWEAGKS SNNSTSSGNS GSGIELQSDT SLFDGGIFQW  300
MDLCSYKEAQ FHLQGEPEDL KWSEFLNSSI QAPATVQNQS QAIMYGEIKE ESQFTVDDGL  360
STWHNYQRRQ HQLQDSDVHG KDIHKLTAAF EQV*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.34e-88MYB family protein